Factsheet for VIT_14s0006g03200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14710_001	Banana	cytosol	95.51	95.51
GSMUA_Achr4P16540_001	Banana	cytosol	95.51	95.51
KRH46911	Soybean	endoplasmic reticulum	93.46	93.46
KRH01781	Soybean	nucleus	93.46	93.46
Solyc02g085790.2.1	Tomato	extracellular	93.27	93.27
PGSC0003DMT400033011	Potato	cytosol	92.9	92.9
Solyc02g063090.2.1	Tomato	nucleus, unclear	92.71	92.71
PGSC0003DMT400062134	Potato	cytosol	92.71	92.71
Bra040591.1-P	Field mustard	cytosol	91.4	91.4
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	91.4	91.4
CDY28697	Canola	cytosol	91.22	91.22
CDY51544	Canola	cytosol	91.22	91.22
Bra008652.1-P	Field mustard	cytosol	91.22	91.04
CDX69477	Canola	cytosol	91.22	91.04
CDY26490	Canola	cytosol	91.22	91.04
AT5G16070.1	Thale cress	cytosol	91.03	91.03
CDX78670	Canola	cytosol	91.03	91.03
CDX70671	Canola	cytosol	91.03	91.03
AT3G02530.1	Thale cress	cytosol	91.03	91.03
EER97762	Sorghum	cytosol	89.91	89.91
Bra006338.1-P	Field mustard	cytosol	76.07	89.65
Zm00001d007192_P001	Maize	cytosol	90.28	89.61
TraesCS6A01G399300.1	Wheat	golgi	87.66	87.66
TraesCS6D01G383500.1	Wheat	unclear	87.66	87.66
HORVU6Hr1G091690.4	Barley	cytosol, plastid	87.48	82.11
VIT_18s0001g00480.t01	Wine grape	cytosol	28.79	29.11
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	26.54	26.64
VIT_12s0028g00350.t01	Wine grape	cytosol	25.79	25.79
VIT_15s0021g02230.t01	Wine grape	cytosol	26.17	25.64
VIT_05s0094g00640.t01	Wine grape	cytosol	7.48	24.84
VIT_00s0670g00010.t01	Wine grape	cytosol	25.98	24.73
VIT_07s0130g00410.t01	Wine grape	cytosol	25.42	24.42
VIT_08s0007g07460.t01	Wine grape	cytosol	24.86	24.4
VIT_17s0000g08170.t01	Wine grape	cytosol	25.05	24.06
VIT_01s0137g00250.t01	Wine grape	cytosol	27.1	21.9

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100249757	wikigene:100249757	MapMan:20.3.1.6	Gene3D:3.50.7.10	ProteinID:CBI33670
ProteinID:CBI33670.3	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	UniProt:D7TT48
EMBL:FN596245	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
EntrezGene:LOC100249757	wikigene:LOC100249757	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	TIGR:TC61825
TIGR:TC66768	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347	UniParc:UPI00015C83D7	ArrayExpress:VIT_14s0006g03200	EnsemblPlantsGene:VIT_14s0006g03200
EnsemblPlants:VIT_14s0006g03200.t01	unigene:Vvi.8980	RefSeq:XP_002283510	RefSeq:XP_002283510.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:21772203..21780805

Molecular Weight (calculated)

59115.6 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.219

Length

535 amino acids

Sequence
(BLAST)

001: MSLRVLNPNA EVLNKSAALH MNINAAKGLQ DVLKTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDTSGDG TTSTVLFIGE
101: LMKQSERYID EGMHPRVLVD GFEIAKRATL QFLEKFKTPV VMGDEPDKEI LKMVARTTLR TKLYEAMADQ LTDIVVNAVL CIRKPEEGID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CYILTSNVSL EYDKSEINAG FFYSSAEQRE AMVAAERRQV DERVKKIIEL KNKVCSGNDN NFVVINQKGI
301: DPPSLDLLAR AGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHILGE EKYTFVENVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTMEDESV VLGAGAFEVA ARQYLVNEVK KTVQGRAQLG VEAFADALLV VPKTLAENSG LDTQDVIIAL TGEHDRGNVV GLNQHTGEPI DPHMEGIFDN
501: YSVKRQIINS GPVIASQLLL VDEVIRAGRN MRKPN

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.