Factsheet for VIT_18s0001g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30467	Soybean	nucleus	92.44	92.79
KRH25193	Soybean	nucleus	92.44	92.79
Solyc11g069000.1.1	Tomato	extracellular	91.68	92.21
GSMUA_Achr2P01800_001	Banana	cytosol	91.49	91.84
CDY71043	Canola	cytosol	54.63	91.75
Bra020134.1-P	Field mustard	cytosol	87.52	91.32
Bra002337.1-P	Field mustard	cytosol	90.93	91.27
CDY16573	Canola	cytosol	90.93	91.27
CDX70950	Canola	cytosol	90.55	90.89
CDX92428	Canola	cytosol	90.55	90.89
Os05t0556700-01	Rice	cytosol, plasma membrane	56.33	90.85
PGSC0003DMT400050534	Potato	cytosol	54.25	90.82
CDY09085	Canola	cytosol	90.36	90.7
CDY72106	Canola	cytosol	36.11	90.09
PGSC0003DMT400033155	Potato	cytosol	60.11	90.08
AT5G20890.1	Thale cress	cytosol	89.41	89.75
EES00491	Sorghum	cytosol	89.04	89.71
CDY72126	Canola	cytosol	35.92	89.62
EES00273	Sorghum	cytosol	86.2	89.41
TraesCS4D01G250100.1	Wheat	cytosol	84.5	89.4
TraesCS4B01G250200.1	Wheat	cytosol	84.31	89.2
Os03t0619400-01	Rice	plasma membrane	88.47	89.14
Zm00001d040257_P001	Maize	cytosol	87.9	88.57
TraesCS4A01G054800.1	Wheat	cytosol, unclear	87.9	88.57
TraesCS5A01G342600.1	Wheat	cytosol	88.09	88.26
TraesCS5D01G347400.1	Wheat	cytosol	88.09	88.26
TraesCS5B01G341900.1	Wheat	cytosol	88.28	87.95
Zm00001d008369_P001	Maize	cytosol, nucleus	86.96	87.62
HORVU5Hr1G085530.1	Barley	mitochondrion	88.09	84.88
HORVU4Hr1G068820.1	Barley	cytosol	87.9	83.04
GSMUA_Achr3P24440_001	Banana	peroxisome	85.26	82.0
Zm00001d040688_P001	Maize	cytosol	39.7	74.73
TraesCS3B01G595300.1	Wheat	cytosol	18.9	74.07
Bra006584.1-P	Field mustard	cytosol	90.36	63.9
CDX88835	Canola	mitochondrion	90.55	63.03
Zm00001d052882_P001	Maize	plastid	40.08	41.81
VIT_15s0021g02230.t01	Wine grape	cytosol	35.92	34.8
VIT_00s0670g00010.t01	Wine grape	cytosol	35.73	33.63
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	33.46	33.21
VIT_12s0028g00350.t01	Wine grape	cytosol	32.89	32.52
VIT_14s0006g03200.t01	Wine grape	cytosol	29.11	28.79
VIT_07s0130g00410.t01	Wine grape	cytosol	29.11	27.65
VIT_17s0000g08170.t01	Wine grape	cytosol	28.54	27.11
VIT_01s0137g00250.t01	Wine grape	cytosol	33.65	26.89
VIT_08s0007g07460.t01	Wine grape	cytosol	26.46	25.69
VIT_05s0094g00640.t01	Wine grape	cytosol	5.67	18.63

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100257518	wikigene:100257518	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10
ProteinID:CCB45400	ProteinID:CCB45400.1	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
UniProt:F6H0C8	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005832	GO:GO:0005886	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0030312	GO:GO:0044183	GO:GO:0046658
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EntrezGene:LOC100257518	wikigene:LOC100257518	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	TIGR:TC55608	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI000210920C	ArrayExpress:VIT_18s0001g00480
EnsemblPlantsGene:VIT_18s0001g00480	EnsemblPlants:VIT_18s0001g00480.t01	unigene:Vvi.2222	RefSeq:XP_002285912	RefSeq:XP_002285912.1	:

Description

No Description!

Coordinates

chr18:-:1358106..1364569

Molecular Weight (calculated)

57483.8 Da

IEP (calculated)

5.683

GRAVY (calculated)

-0.068

Length

529 amino acids

Sequence
(BLAST)

001: MAIDNLFKDD ATEEKGERAR MASFIGAMAI ADLVKTTLGP KGMDKILQST GRGRSVTVTN DGATILKSLH IDNPAAKVLV GTDISKVQDD EVGDGTTSVV
101: VLAGELLREA EKLVAAKIHP MTIISGYRMA AECARNALLQ KVMDNKEDAE KFKLDLMKIA MTTLSSKILS QDKEHFAKLA VDAVMRLKGS TNLESIQIIK
201: KPGGSLKDSF LDEGFILDKK IGIGQPKRIE NAKILVANTA MDTDKVKIYG ARVRVDSMSR VAQIEGAEKE KMREKVQKII GHGINCFVNR QLIYNFPEEL
301: FADAGVLAIE HADFDGIERL ALVTGGEIAS TFDNPESVKL GHCKLIEEIM IGEDKLIHFS GVEMGQACTI VLRGASFHVL DEAERSLHDA LCVLSQTVID
401: SRVLLGGGWP EMVMAKEVDE LARKTPGKKS HAIEAFSRAL ISIPTTIADN AGLDSAELIA QLRAEHHKEE SHAGIDVISG SVGDMAELGI SEAFKVKQAV
501: LLSATEAAEM ILRVDEIITC APRRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.