Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002337.1-P | Field mustard | cytosol | 96.2 | 96.2 |
| CDX70950 | Canola | cytosol | 96.2 | 96.2 |
| CDX92428 | Canola | cytosol | 96.2 | 96.2 |
| CDY16573 | Canola | cytosol | 96.2 | 96.2 |
| Bra020134.1-P | Field mustard | cytosol | 91.65 | 95.27 |
| CDY09085 | Canola | cytosol | 95.26 | 95.26 |
| CDY72106 | Canola | cytosol | 37.95 | 94.34 |
| CDY72126 | Canola | cytosol | 37.76 | 93.87 |
| VIT_18s0001g00480.t01 | Wine grape | cytosol | 89.75 | 89.41 |
| KRH25193 | Soybean | nucleus | 89.18 | 89.18 |
| KRH30467 | Soybean | nucleus | 88.8 | 88.8 |
| Solyc11g069000.1.1 | Tomato | extracellular | 88.05 | 88.21 |
| Os05t0556700-01 | Rice | cytosol, plasma membrane | 54.84 | 88.11 |
| TraesCS4D01G250100.1 | Wheat | cytosol | 83.49 | 88.0 |
| TraesCS4B01G250200.1 | Wheat | cytosol | 83.49 | 88.0 |
| Os03t0619400-01 | Rice | plasma membrane | 87.67 | 88.0 |
| GSMUA_Achr2P01800_001 | Banana | cytosol | 87.86 | 87.86 |
| TraesCS4A01G054800.1 | Wheat | cytosol, unclear | 87.29 | 87.62 |
| TraesCS5A01G342600.1 | Wheat | cytosol | 87.29 | 87.12 |
| TraesCS5D01G347400.1 | Wheat | cytosol | 87.29 | 87.12 |
| EES00491 | Sorghum | cytosol | 86.72 | 87.05 |
| Zm00001d040257_P001 | Maize | cytosol | 86.72 | 87.05 |
| PGSC0003DMT400050534 | Potato | cytosol | 52.18 | 87.03 |
| EES00273 | Sorghum | cytosol | 84.06 | 86.86 |
| PGSC0003DMT400033155 | Potato | cytosol | 58.06 | 86.69 |
| TraesCS5B01G341900.1 | Wheat | cytosol | 87.1 | 86.44 |
| Zm00001d008369_P001 | Maize | cytosol, nucleus | 85.77 | 86.1 |
| HORVU5Hr1G085530.1 | Barley | mitochondrion | 86.91 | 83.42 |
| HORVU4Hr1G068820.1 | Barley | cytosol | 87.1 | 81.96 |
| GSMUA_Achr3P24440_001 | Banana | peroxisome | 82.54 | 79.09 |
| Zm00001d040688_P001 | Maize | cytosol | 39.66 | 74.38 |
| TraesCS3B01G595300.1 | Wheat | cytosol | 18.6 | 72.59 |
| Bra006584.1-P | Field mustard | cytosol | 95.83 | 67.51 |
| CDX88835 | Canola | mitochondrion | 96.02 | 66.58 |
| Zm00001d052882_P001 | Maize | plastid | 38.33 | 39.84 |
| AT3G18190.1 | Thale cress | cytosol, plastid | 33.97 | 33.4 |
| AT3G11830.1 | Thale cress | cytosol | 35.29 | 33.39 |
| AT3G20050.1 | Thale cress | cytosol | 34.35 | 33.21 |
| AT1G24510.1 | Thale cress | cytosol | 31.69 | 31.21 |
| AT3G02530.1 | Thale cress | cytosol | 27.51 | 27.1 |
| AT5G16070.1 | Thale cress | cytosol | 27.13 | 26.73 |
| AT5G26360.1 | Thale cress | cytosol | 28.08 | 26.67 |
| AT3G03960.1 | Thale cress | cytosol | 26.19 | 25.14 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.2 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | EntrezGene:832213 | UniProt:A0A178UL10 |
| ProteinID:AED92901.1 | EMBL:AF296834 | ArrayExpress:AT5G20890 | EnsemblPlantsGene:AT5G20890 | RefSeq:AT5G20890 | TAIR:AT5G20890 |
| RefSeq:AT5G20890-TAIR-G | EnsemblPlants:AT5G20890.1 | TAIR:AT5G20890.1 | EMBL:AY054210 | EMBL:AY062651 | EMBL:AY085104 |
| Unigene:At.19837 | EMBL:BT002090 | InterPro:Chap_CCT_beta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | InterPro:Cpn60/TCP-1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005832 |
| GO:GO:0005886 | GO:GO:0006457 | GO:GO:0006458 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0030312 | GO:GO:0044183 | GO:GO:0046658 | GO:GO:0051082 | GO:GO:0061077 | InterPro:GROEL-like_equatorial_sf |
| InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 | RefSeq:NP_197589.1 | ProteinID:OAO94488.1 |
| PFAM:PF00118 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00304 | ScanProsite:PS00750 |
| ScanProsite:PS00751 | ScanProsite:PS00995 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF23 | UniProt:Q940P8 | SUPFAM:SSF48592 |
| SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02341 | UniParc:UPI00000AC225 | SEG:seg |
Description
CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
Coordinates
chr5:-:7086653..7090169
Molecular Weight (calculated)
57289.4 Da
IEP (calculated)
5.668
GRAVY (calculated)
-0.098
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.