Factsheet for Os03t0619400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 24083427
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00273	Sorghum	cytosol	92.57	95.29
EES00491	Sorghum	cytosol	95.24	95.24
TraesCS4D01G250100.1	Wheat	cytosol	90.29	94.8
TraesCS4B01G250200.1	Wheat	cytosol	90.1	94.6
TraesCS4A01G054800.1	Wheat	cytosol, unclear	94.48	94.48
Zm00001d040257_P001	Maize	cytosol	94.1	94.1
Os05t0556700-01	Rice	cytosol, plasma membrane	58.48	93.6
TraesCS5A01G342600.1	Wheat	cytosol	94.1	93.56
TraesCS5D01G347400.1	Wheat	cytosol	93.9	93.37
Zm00001d008369_P001	Maize	cytosol, nucleus	93.14	93.14
TraesCS5B01G341900.1	Wheat	cytosol	94.1	93.03
HORVU5Hr1G085530.1	Barley	mitochondrion	94.1	89.98
GSMUA_Achr2P01800_001	Banana	cytosol	89.52	89.18
CDY71043	Canola	cytosol	53.33	88.89
KRH25193	Soybean	nucleus	89.14	88.8
Bra020134.1-P	Field mustard	cytosol	85.71	88.76
KRH30467	Soybean	nucleus	88.95	88.61
VIT_18s0001g00480.t01	Wine grape	cytosol	89.14	88.47
HORVU4Hr1G068820.1	Barley	cytosol	94.29	88.39
Bra002337.1-P	Field mustard	cytosol	88.19	87.86
CDX70950	Canola	cytosol	88.19	87.86
CDY16573	Canola	cytosol	88.19	87.86
Solyc11g069000.1.1	Tomato	extracellular	88.0	87.83
AT5G20890.1	Thale cress	cytosol	88.0	87.67
CDX92428	Canola	cytosol	88.0	87.67
CDY09085	Canola	cytosol	87.81	87.48
CDY72106	Canola	cytosol	34.86	86.32
CDY72126	Canola	cytosol	34.67	85.85
GSMUA_Achr3P24440_001	Banana	peroxisome	84.57	80.73
Bra006584.1-P	Field mustard	cytosol	87.81	61.63
CDX88835	Canola	mitochondrion	87.81	60.66
PGSC0003DMT400019727	Potato	cytosol	16.0	60.43
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	35.81	34.5
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	34.29	33.64
Os02t0332200-01	Rice	plasma membrane	32.76	32.21
Os10t0514600-01	Rice	plasma membrane	31.43	30.5
Os06t0687700-01	Rice	plasma membrane	17.14	29.8
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	29.14	28.6
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	29.14	27.42
Os02t0247200-01	Rice	cytosol	27.62	25.94
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	26.1	25.09

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4333462	ProteinID:AAT77033.1
ProteinID:ABF97657.1	ProteinID:BAS85295.1	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
ProteinID:EAZ27804.1	EMBL:EU847021	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlantsGene:Os03g0619400	EnsemblPlants:Os03t0619400-01	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	UniProt:Q6AV23	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI00003FE654	RefSeq:XP_015632793.1
RefSeq:XP_015632794.1	:	:	:	:	:

Description

Chaperone, tailless complex polypeptide 1 domain containing protein. (Os03t0619400-01)

Coordinates

chr3:+:23485494..23490540

Molecular Weight (calculated)

57232.5 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.069

Length

525 amino acids

Sequence
(BLAST)

001: MERVLKDDAV EEKGERARMA AFIGAMAIAD LVKTTLGPKG MDKILQSTGR GRSVTVTNDG ATILKSLHID NPAAKVLVDI SKVQDDEVGD GTTSVVVLAG
101: ELLREAEKLV NMKIHPMTII AGYRMAVECA RNALLERTMD NKENIDKFRS DLMNIAMTTL SSKILSQDKE YFAELAVDAV LRLKGSTNLE AIQILKIPGG
201: SLKDSFLDEG FILDKKIGLG QPKRIENAKI LVANTAMDTD KVKIYGARVR VDSMAKVAEI EAAEKQKMRE KVQKIIGHGI NCFVNRQLIY NFPEELFADA
301: GILAIEHADF EGIERLALVT GGDIASTFDN PESVKLGHCN VIEEIMIGED KLIHFSGVAM GQACTIVLRG ASEHVLDEAE RSLHDALCVL SQTVNDTRVL
401: FGGGWPEMVM AKAVDDLARK TPGKKSHAID AFSRALQAIP TIIADNAGLD SAELISQLRA EHHKENCTAG IDVITGSVGD MQKRGISEAF KVKQAILLSA
501: TEAAEMILRV DEIITCAPRR REDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.