CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 19658398
nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30467	Soybean	nucleus	99.05	99.05
VIT_18s0001g00480.t01	Wine grape	cytosol	92.79	92.44
CDY71043	Canola	cytosol	54.27	90.79
Solyc11g069000.1.1	Tomato	extracellular	90.51	90.68
GSMUA_Achr2P01800_001	Banana	cytosol	89.75	89.75
PGSC0003DMT400050534	Potato	cytosol	53.7	89.56
Bra020134.1-P	Field mustard	cytosol	86.15	89.55
TraesCS4D01G250100.1	Wheat	cytosol	84.82	89.4
Os05t0556700-01	Rice	cytosol, plasma membrane	55.6	89.33
PGSC0003DMT400033155	Potato	cytosol	59.77	89.24
TraesCS4B01G250200.1	Wheat	cytosol	84.63	89.2
Bra002337.1-P	Field mustard	cytosol	89.18	89.18
AT5G20890.1	Thale cress	cytosol	89.18	89.18
Os03t0619400-01	Rice	plasma membrane	88.8	89.14
EES00491	Sorghum	cytosol	88.05	88.38
TraesCS4A01G054800.1	Wheat	cytosol, unclear	88.05	88.38
EES00273	Sorghum	cytosol	85.39	88.24
TraesCS5A01G342600.1	Wheat	cytosol	88.05	87.88
TraesCS5D01G347400.1	Wheat	cytosol	87.86	87.69
Zm00001d040257_P001	Maize	cytosol	87.29	87.62
TraesCS5B01G341900.1	Wheat	cytosol	88.05	87.38
Zm00001d008369_P001	Maize	cytosol, nucleus	86.34	86.67
HORVU5Hr1G085530.1	Barley	mitochondrion	87.86	84.34
HORVU4Hr1G068820.1	Barley	cytosol	87.86	82.68
GSMUA_Achr3P24440_001	Banana	peroxisome	83.87	80.36
Zm00001d040688_P001	Maize	cytosol	39.47	74.02
TraesCS3B01G595300.1	Wheat	cytosol	18.41	71.85
Bra006584.1-P	Field mustard	cytosol	88.99	62.7
KRH33254	Soybean	cytosol	6.45	43.04
Zm00001d052882_P001	Maize	plastid	39.66	41.22
KRH62761	Soybean	mitochondrion	9.87	38.24
KRH76087	Soybean	cytosol, endoplasmic reticulum	10.44	35.03
KRH57568	Soybean	cytosol	7.21	34.55
KRH59103	Soybean	nucleus	35.67	34.5
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	35.67	34.5
KRH49364	Soybean	endoplasmic reticulum, nucleus	33.02	34.05
KRH60476	Soybean	endoplasmic reticulum	34.35	33.96
KRH41771	Soybean	endoplasmic reticulum, nucleus	34.35	33.96
KRG97508	Soybean	cytosol, nucleus	34.16	33.64
KRH31372	Soybean	nucleus	34.16	33.64
KRH73433	Soybean	endoplasmic reticulum, nucleus	35.29	33.21
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	35.29	33.21
KRH46911	Soybean	endoplasmic reticulum	29.41	28.97
KRH01781	Soybean	nucleus	29.22	28.79
KRH38791	Soybean	cytosol	29.22	27.8
KRG92501	Soybean	cytosol	28.84	27.29
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	28.46	27.08
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	26.19	25.32
KRH70153	Soybean	nucleus	26.19	25.32
KRH62778	Soybean	cytosol, endoplasmic reticulum	13.85	20.8

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100797805	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02007222
InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_12G087300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	UniProt:I1LRE4	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH25193
ProteinID:KRH25193	ProteinID:KRH25193.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI000233C2A7	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:7111064..7118759

Molecular Weight (calculated)

57104.4 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.029

Length

527 amino acids

Sequence
(BLAST)

001: MAIDNIFKNE ASEEKGERAR MASFVGAMAI ADLVKTTLGP KGMDKILQST GRGREVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVATKIHPMT IISGFRMAAE CARNALLEKV VDNKADSEKF RSDLLNIAMT TLSSKILSQD KEHFAKLAVD AVMRLKGSTN LESIQIIKKP
201: GGSLMDSFLD EGFILDKKIG IGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMARVA QIETAEKEKM REKVQKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFDGIERLAL VTGGEIASTF DNPESVKLGH CDLIEEIMIG EDKLIHFSGV AMGQACTIVL RGASHHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKEVDALA KKTPGKKSLA IEAFSRALLA IPTIIADNAG LDSAELISQL RAEHQKEGCT AGIDVISGSV GDMAERGICE AFKVKQAVLL
501: SSTEAAEMIL RVDEIITCAP RRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.