CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25193
KRH30467

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	KRH25193	AT5G20890.1	21798944
AT3G18190.1	KRH30467	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60476	Soybean	endoplasmic reticulum	95.69	91.74
KRH41771	Soybean	endoplasmic reticulum, nucleus	95.5	91.56
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	89.04	85.37
Bra021300.1-P	Field mustard	cytosol	86.11	82.86
CDY24438	Canola	cytosol, plastid	86.3	82.74
CDX92212	Canola	cytosol, plastid	86.3	82.74
CDY18509	Canola	cytosol	85.91	82.67
CDX95541	Canola	cytosol, plastid	85.91	82.21
Bra022292.1-P	Field mustard	cytosol, plastid	85.71	82.18
AT3G18190.1	Thale cress	cytosol, plastid	86.11	82.09
PGSC0003DMT400014441	Potato	plastid	85.13	80.7
Solyc03g118910.1.1	Tomato	plastid	84.93	80.52
GSMUA_Achr3P20910_001	Banana	cytosol	51.66	76.3
Os02t0332200-01	Rice	plasma membrane	77.69	74.34
EER95631	Sorghum	cytosol	77.69	74.21
Zm00001d027371_P001	Maize	plasma membrane	77.3	73.83
TraesCS7D01G164400.1	Wheat	cytosol	76.91	73.6
TraesCS7A01G426400.1	Wheat	unclear	76.91	73.6
HORVU7Hr1G034140.1	Barley	plasma membrane	76.71	73.41
Zm00001d051742_P001	Maize	plastid	76.71	73.27
TraesCS7B01G068100.1	Wheat	golgi, unclear	76.32	73.03
GSMUA_Achr6P09540_001	Banana	cytosol	52.25	72.75
Os10t0514600-01	Rice	plasma membrane	73.78	69.69
TraesCS6B01G391500.1	Wheat	mitochondrion	69.67	68.2
KRH33254	Soybean	cytosol	6.46	41.77
KRH31372	Soybean	nucleus	35.81	34.21
KRG97508	Soybean	cytosol, nucleus	35.81	34.21
KRH30467	Soybean	nucleus	34.05	33.02
KRH25193	Soybean	nucleus	34.05	33.02
KRH57568	Soybean	cytosol	7.05	32.73
KRH62761	Soybean	mitochondrion	8.61	32.35
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	32.29	30.28
KRH59103	Soybean	nucleus	32.29	30.28
KRH73433	Soybean	endoplasmic reticulum, nucleus	31.7	28.93
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	31.7	28.93
KRH76087	Soybean	cytosol, endoplasmic reticulum	8.81	28.66
KRH38791	Soybean	cytosol	29.75	27.44
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	29.35	27.08
KRG92501	Soybean	cytosol	29.35	26.93
KRH46911	Soybean	endoplasmic reticulum	26.61	25.42
KRH01781	Soybean	nucleus	26.22	25.05
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	26.03	24.4
KRH70153	Soybean	nucleus	25.64	24.04
KRH62778	Soybean	cytosol, endoplasmic reticulum	16.44	23.93

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100818827	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02004355
InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_07G149200	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	UniProt:I1KKD9	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH49364
ProteinID:KRH49364	ProteinID:KRH49364.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02342	UniParc:UPI0002338813	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:17928359..17929894

Molecular Weight (calculated)

55182.6 Da

IEP (calculated)

7.594

GRAVY (calculated)

0.118

Length

511 amino acids

Sequence
(BLAST)

001: MAAIAAPQHR SSKTESYVDN KRKEDIRHAN IVVARSVASA VRTSLGPKGM DKMISTSSDE VIITNDGATI LNKMLVLQPA AKMLVELSKS QDSAAGDGTT
101: TVVVIAGALL EQCILLLSHG IHPTVVSDAL HKAAVKAVDV LTAMAVPIEL SDRDSLVKSA STSLNSKVVS QYSTLLAPLA VDAVLSVVDG TKPDMVDLRD
201: VKIVKKLGGT VDDTELVKGL VFDKKVSHAA GGPTRMENAK IAVIQFHISP PKTDIEQSIV VSDYSQMDRI LKEERSYILG MIKKIKTTGC NVLLIQKSIL
301: RDAITDLSLH YLAKAKILVI KDVERDEIEF ITKTLNCLPI ANIEHFRTEK LGYADLVEEV SLGDGKIVKI TGIKEMGKTS TVLVRGSNQL LLDEAERSLH
401: DALCVVRCLV AKRFLIAGGG APEIELSRKL GAWAKVLHGM EGYCVRAFAE ALQVIPYTLA ENAGLNPIAI VTELRNRHAQ GEINAGINVR KGQITNILEE
501: NVVELIQQCG I

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.