CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00273
EES00491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	EES00273	AT5G20890.1	21798944
AT3G18190.1	EES00491	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051742_P001	Maize	plastid	98.32	98.32
Zm00001d027371_P001	Maize	plasma membrane	97.57	97.57
Os02t0332200-01	Rice	plasma membrane	94.77	94.94
HORVU7Hr1G034140.1	Barley	plasma membrane	93.27	93.45
TraesCS7D01G164400.1	Wheat	cytosol	92.52	92.7
TraesCS7B01G068100.1	Wheat	golgi, unclear	92.52	92.7
TraesCS7A01G426400.1	Wheat	unclear	92.52	92.7
Os10t0514600-01	Rice	plasma membrane	88.6	87.62
TraesCS6B01G391500.1	Wheat	mitochondrion	82.62	84.67
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	81.68	81.99
KRH60476	Soybean	endoplasmic reticulum	80.37	80.68
KRH41771	Soybean	endoplasmic reticulum, nucleus	80.19	80.49
Bra021300.1-P	Field mustard	cytosol	78.88	79.47
PGSC0003DMT400014441	Potato	plastid	80.0	79.41
CDY18509	Canola	cytosol	78.69	79.28
CDX92212	Canola	cytosol, plastid	78.88	79.17
CDY24438	Canola	cytosol, plastid	78.88	79.17
Solyc03g118910.1.1	Tomato	plastid	79.63	79.04
CDX95541	Canola	cytosol, plastid	78.88	79.03
AT3G18190.1	Thale cress	cytosol, plastid	78.69	78.54
Bra022292.1-P	Field mustard	cytosol, plastid	78.13	78.42
KRH49364	Soybean	endoplasmic reticulum, nucleus	74.21	77.69
GSMUA_Achr6P09540_001	Banana	cytosol	53.08	77.38
EER97880	Sorghum	cytosol	36.45	36.45
EER88530	Sorghum	cytosol	35.7	35.7
EES00273	Sorghum	cytosol	31.59	33.14
EES00491	Sorghum	cytosol	32.15	32.76
EES05938	Sorghum	cytosol	31.03	30.46
EES04545	Sorghum	cytosol	31.59	30.18
EER92655	Sorghum	cytosol	29.35	28.14
EES09994	Sorghum	cytosol	26.92	26.28
EER97762	Sorghum	cytosol	25.98	25.98

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.50.7.10	EntrezGene:8077986	UniProt:C5X0Z6	InterPro:Chap_CCT_delta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EER95631	ProteinID:EER95631	ProteinID:EER95631.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0046686	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26
EnsemblPlantsGene:SORBI_3001G530800	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.1317	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02342	UniParc:UPI0001A8324F	RefSeq:XP_002468633.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:79450238..79454838

Molecular Weight (calculated)

57714.2 Da

IEP (calculated)

7.529

GRAVY (calculated)

0.073

Length

535 amino acids

Sequence
(BLAST)

001: MAAAAAATAP SRKTETYTDT KRRDDVRGAN IAAARAVADA VRTSLGPRGM DKMISSGDQA QEVIITNDGA TILSRMALLQ PAARMLAELS RSQDAAAGDG
101: TTTVVVLAGS LLRRAQSLLS AGAHPTAAAD ALHRLATRAV EILHAMAIPI ELSDRESLVK SASTALNSKV VSQYSTLLSP LAVDAALSVV DPAHPDLLDL
201: RDIRIVKKLG GTVDDTELVR GLIFDKKASH AAGGPSRVEN AKIAVIQFQI SPPKTDIEQS VIVSDYAQMD RILREERNYI LGMVKKIKAA GCNVLLIQKS
301: ILRDAVTDLS LHYLAKAKIL VVKDVERDEI EFITKTLNCL PIANIEHFRT DKLGYADVVE EISVGEGKVV KITGIRDMGR TATVLVRGSN QLVIDEAERS
401: LHDALCVIRC LVNKRFLIAG GGAPEIEMSM QLAAWAKELR GMESYCIKEF AEALEVIPYT LAENAGLNPI SIVTELRNRH ARGEKNAGIN VRKGQITNIL
501: EENVVQPLLV STSAITLACE CVRMILKIDD IVTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.