Factsheet for VIT_17s0000g03040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g00480.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	VIT_18s0001g00480.t01	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60476	Soybean	endoplasmic reticulum	92.68	92.68
KRH41771	Soybean	endoplasmic reticulum, nucleus	91.93	91.93
PGSC0003DMT400014441	Potato	plastid	91.18	90.17
AT3G18190.1	Thale cress	cytosol, plastid	90.24	89.74
Bra021300.1-P	Field mustard	cytosol	89.31	89.64
Solyc03g118910.1.1	Tomato	plastid	90.62	89.61
GSMUA_Achr3P20910_001	Banana	cytosol	58.16	89.6
CDY24438	Canola	cytosol, plastid	89.49	89.49
CDY18509	Canola	cytosol	89.12	89.45
CDX92212	Canola	cytosol, plastid	89.12	89.12
KRH49364	Soybean	endoplasmic reticulum, nucleus	85.37	89.04
CDX95541	Canola	cytosol, plastid	89.12	88.95
Bra022292.1-P	Field mustard	cytosol, plastid	88.37	88.37
Os02t0332200-01	Rice	plasma membrane	82.18	82.02
EER95631	Sorghum	cytosol	81.99	81.68
Zm00001d051742_P001	Maize	plastid	81.05	80.75
Zm00001d027371_P001	Maize	plasma membrane	81.05	80.75
HORVU7Hr1G034140.1	Barley	plasma membrane	80.3	80.15
TraesCS7A01G426400.1	Wheat	unclear	80.11	79.96
TraesCS7B01G068100.1	Wheat	golgi, unclear	80.11	79.96
TraesCS7D01G164400.1	Wheat	cytosol	80.11	79.96
GSMUA_Achr6P09540_001	Banana	cytosol	53.85	78.2
Os10t0514600-01	Rice	plasma membrane	78.24	77.08
TraesCS6B01G391500.1	Wheat	mitochondrion	73.55	75.1
VIT_12s0028g00350.t01	Wine grape	cytosol	35.65	35.51
VIT_18s0001g00480.t01	Wine grape	cytosol	33.21	33.46
VIT_15s0021g02230.t01	Wine grape	cytosol	33.58	32.78
VIT_00s0670g00010.t01	Wine grape	cytosol	32.46	30.78
VIT_01s0137g00250.t01	Wine grape	cytosol	37.34	30.06
VIT_07s0130g00410.t01	Wine grape	cytosol	30.02	28.73
VIT_17s0000g08170.t01	Wine grape	cytosol	29.83	28.55
VIT_08s0007g07460.t01	Wine grape	cytosol	27.58	26.97
VIT_14s0006g03200.t01	Wine grape	cytosol	26.64	26.54
VIT_05s0094g00640.t01	Wine grape	cytosol	7.13	23.6

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100262936	wikigene:100262936	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EMBL:AM451055	EMBL:AM473677	ProteinID:CAN65390	ProteinID:CAN65390.1	ProteinID:CAN70636	ProteinID:CAN70636.1
ProteinID:CCB43247	ProteinID:CCB43247.1	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
UniProt:F6GTS3	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0046686	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100262936	wikigene:LOC100262936	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	TIGR:TC56702	TIGR:TC59596	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI00015C940F
ArrayExpress:VIT_17s0000g03040	EnsemblPlantsGene:VIT_17s0000g03040	EnsemblPlants:VIT_17s0000g03040.t01	unigene:Vvi.10008	RefSeq:XP_002280234	RefSeq:XP_002280234.1
SEG:seg	:	:	:	:	:

Description

T-complex protein 1 subunit delta [Source:UniProtKB/TrEMBL;Acc:F6GTS3]

Coordinates

chr17:+:2870895..2872707

Molecular Weight (calculated)

57592.6 Da

IEP (calculated)

7.473

GRAVY (calculated)

0.164

Length

533 amino acids

Sequence
(BLAST)

001: MAAPVAPLVR SSKTESYVDN KRKDDIRQAN IVAARAVADA VRTSLGPKGM DKMISTASGE VIITNDGATI LNKMEVLQPA AKMLVELSKS QDIVAGDGTT
101: TVVVIAGALL KQCLSLLSHG IHPTIISDSL HKASIKAVDV LTAMAVPVEL SDRESLIKSA STSLNSKVVS QYSTLLAPLA VDAVLSVVDP AKPDLVDLRD
201: VKIVKKLGGT VDDTELVKGL VFDKKVSHTA GGPTRVENAK IAVIQFQISP PKTDIEQSIV VSDYTQMDRI LKEERNYILG MIKKIKATGC NVLLIQKSIL
301: RDAVTDLSLH YLAKAKILVI KDVERDEIEF ITKTLNCLPI ANIEHFRAEK LGFADCVEEV SLGDGKIVKI TGIKDMGRTT TVLVRGSNML VLDEAERSLH
401: DALCVVRCLV NKRFLIAGGG APEIELSRQL GAWAKVLQGM ESYCVRSFAE ALEVIPYTLA ENAGLNPISI VTELRNRHAQ GEINAGINVR KGQITNILEE
501: NVVQPLLVST SAITLATECV RMILKIDDIV TVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.