Factsheet for PGSC0003DMT400014441

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400033155
PGSC0003DMT400050534

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	PGSC0003DMT400033155	AT5G20890.1	21798944
AT3G18190.1	PGSC0003DMT400050534	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118910.1.1	Tomato	plastid	98.7	98.7
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	90.17	91.18
AT3G18190.1	Thale cress	cytosol, plastid	89.05	89.55
Bra021300.1-P	Field mustard	cytosol	87.94	89.27
CDY18509	Canola	cytosol	87.76	89.08
CDY24438	Canola	cytosol, plastid	87.94	88.93
CDX95541	Canola	cytosol, plastid	87.94	88.76
KRH60476	Soybean	endoplasmic reticulum	87.76	88.74
CDX92212	Canola	cytosol, plastid	87.76	88.74
KRH41771	Soybean	endoplasmic reticulum, nucleus	87.57	88.56
Bra022292.1-P	Field mustard	cytosol, plastid	87.01	87.99
KRH49364	Soybean	endoplasmic reticulum, nucleus	80.7	85.13
GSMUA_Achr3P20910_001	Banana	cytosol	54.55	84.97
Os02t0332200-01	Rice	plasma membrane	79.41	80.15
EER95631	Sorghum	cytosol	79.41	80.0
HORVU7Hr1G034140.1	Barley	plasma membrane	79.22	79.96
TraesCS7B01G068100.1	Wheat	golgi, unclear	79.22	79.96
TraesCS7D01G164400.1	Wheat	cytosol	78.85	79.59
TraesCS7A01G426400.1	Wheat	unclear	78.85	79.59
Zm00001d027371_P001	Maize	plasma membrane	78.66	79.25
Zm00001d051742_P001	Maize	plastid	78.48	79.07
Os10t0514600-01	Rice	plasma membrane	75.88	75.6
TraesCS6B01G391500.1	Wheat	mitochondrion	72.91	75.29
GSMUA_Achr6P09540_001	Banana	cytosol	51.21	75.2
PGSC0003DMT400027968	Potato	cytosol	15.58	38.36
PGSC0003DMT400019727	Potato	cytosol	9.46	36.69
PGSC0003DMT400033155	Potato	cytosol	21.52	32.86
PGSC0003DMT400066954	Potato	cytosol	32.84	32.48
PGSC0003DMT400067201	Potato	cytosol	31.54	30.47
PGSC0003DMT400073555	Potato	cytosol	14.47	29.89
PGSC0003DMT400050534	Potato	cytosol	17.07	29.11
PGSC0003DMT400060294	Potato	cytosol	29.87	29.01
PGSC0003DMT400017609	Potato	cytosol	26.9	26.8
PGSC0003DMT400062134	Potato	cytosol	24.68	24.86
PGSC0003DMT400033011	Potato	cytosol	24.49	24.67

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102603797	MapMan:20.3.1.4	Gene3D:3.50.7.10	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0046686	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1A483	PFAM:PF00118
EnsemblPlantsGene:PGSC0003DMG400005665	PGSC:PGSC0003DMG400005665	EnsemblPlants:PGSC0003DMT400014441	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02342	UniParc:UPI0002951A8A	RefSeq:XP_006341549.1	SEG:seg	:	:

Description

T-complex protein 1 subunit delta [Source:PGSC_GENE;Acc:PGSC0003DMG400005665]

Coordinates

chr3:-:58419392..58421451

Molecular Weight (calculated)

57992.9 Da

IEP (calculated)

7.195

GRAVY (calculated)

0.135

Length

539 amino acids

Sequence
(BLAST)

001: MASPAGVSAP RSAASSSKTE TFVDNKRKDD IRMANIAAAQ AVANAVRTSL GPKGMDKMIS TANGEVIITN DGATILNKME VLQPAAKFLV ELSKSQDVVA
101: GDGTTTVVVI AGALLKQCLS LLSAGIHPTV ISDSLHKVST KAVEVLTAMA LPVELTDRDS LVKSASTALN SKVVSQYSTL LAPLAVDSVL SVVDPEKPEI
201: VDLRDIKIVK KLGGTVDDTE LVKGLVFDKK VSHASGGLTR VEKAKIGVIQ FQISPPKTDI EQSIVVSDYT QMDRILKEER NYILGMIKKI KATGCNVLLI
301: QKSILRDAVT ELSLHYLSKA KILVIKDVER DEIEFITKTL NCLPIANIDH FRAEKLGHAD LVEEISLGDG GKIVKITGIQ DMGRTTSVLV RGSNQLVLDE
401: AERSLHDALC VVRCLVNKRF LIAGGGAPEI ELSRQLGAWA KVLQGMEGYC VRSFAEALEV IPYTLAENAG LNPIAIVTEL RNRHAQGEIN TGINVRKGQI
501: TNILEENVVQ PLLVSTSAIT LATECVRMIL KIDDIVTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.