Factsheet for PGSC0003DMT400033155

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050534	Potato	cytosol	72.52	81.01
CDY71043	Canola	cytosol	67.42	75.56
Solyc11g069000.1.1	Tomato	extracellular	97.73	65.59
Bra020134.1-P	Field mustard	cytosol	86.4	60.16
VIT_18s0001g00480.t01	Wine grape	cytosol	90.08	60.11
KRH25193	Soybean	nucleus	89.24	59.77
KRH30467	Soybean	nucleus	88.39	59.2
GSMUA_Achr2P01800_001	Banana	cytosol	87.82	58.82
CDX92428	Canola	cytosol	86.97	58.25
CDY16573	Canola	cytosol	86.97	58.25
Bra002337.1-P	Field mustard	cytosol	86.97	58.25
CDX70950	Canola	cytosol	86.97	58.25
AT5G20890.1	Thale cress	cytosol	86.69	58.06
CDY09085	Canola	cytosol	86.4	57.87
GSMUA_Achr3P24440_001	Banana	peroxisome	83.57	53.64
Bra006584.1-P	Field mustard	cytosol	86.69	40.91
CDX88835	Canola	mitochondrion	86.97	40.39
CDY72126	Canola	cytosol	19.26	32.08
CDY72106	Canola	cytosol	19.26	32.08
PGSC0003DMT400073555	Potato	cytosol	18.7	25.29
PGSC0003DMT400014441	Potato	plastid	32.86	21.52
PGSC0003DMT400066954	Potato	cytosol	31.44	20.37
PGSC0003DMT400067201	Potato	cytosol	32.01	20.25
PGSC0003DMT400027968	Potato	cytosol	12.18	19.63
PGSC0003DMT400062134	Potato	cytosol	28.33	18.69
PGSC0003DMT400033011	Potato	cytosol	27.76	18.32
PGSC0003DMT400060294	Potato	cytosol	27.2	17.3
PGSC0003DMT400017609	Potato	cytosol	23.23	15.16
PGSC0003DMT400019727	Potato	cytosol	3.97	10.07

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:M1AYP7	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400012727	PGSC:PGSC0003DMG400012727	EnsemblPlants:PGSC0003DMT400033155
PRINTS:PR00304	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	UniParc:UPI0002953F30	:	:	:	:

Description

T-complex protein 1 subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG400012727]

Coordinates

chr4:-:11312010..11315676

Molecular Weight (calculated)

38409.4 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.070

Length

353 amino acids

Sequence
(BLAST)

001: MASECARNVL EQKVVDNKQD AEKFRSDLMN IARTTLSSKI LSQDKEHFAK LAVDAVMRLK GSTNLEAIQI IKKPGGSLKD SFLDEGFILD KKIGVGQPKR
101: IENAKILVAN TAMDTDKLIY NFPEELFADA GILAIEHADF DGIERLGLVT GEEIALTFDN PESVKLGHCK LIEEIMIGED KLIHFSGVAM GQACTIVLRG
201: ASSHVLDEAE RSLHDALCVL SQTVNDSRVL LGGGWPEMAM AKAVDELAKK TPGKRSHAIE AFTRALLAIP TTIDNTGLDS AELIAQLRAE HHKDESNAGI
301: DVISGSVGDM SELGICESFK VKQAVLLSAT EVTEMILRVD EIITCAPRRR EGM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.