Factsheet for GSMUA_Achr3P24440_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 4
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
peroxisome 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01800_001	Banana	cytosol	86.91	90.7
VIT_18s0001g00480.t01	Wine grape	cytosol	82.0	85.26
Zm00001d040257_P001	Maize	cytosol	80.91	84.76
EES00491	Sorghum	cytosol	80.91	84.76
Os03t0619400-01	Rice	plasma membrane	80.73	84.57
EES00273	Sorghum	cytosol	78.36	84.51
Os05t0556700-01	Rice	cytosol, plasma membrane	50.36	84.45
Solyc11g069000.1.1	Tomato	extracellular	80.73	84.41
TraesCS4D01G250100.1	Wheat	cytosol	76.73	84.4
TraesCS4B01G250200.1	Wheat	cytosol	76.73	84.4
Bra020134.1-P	Field mustard	cytosol	77.64	84.22
Zm00001d008369_P001	Maize	cytosol, nucleus	80.36	84.19
TraesCS4A01G054800.1	Wheat	cytosol, unclear	80.36	84.19
TraesCS5D01G347400.1	Wheat	cytosol	80.55	83.9
KRH25193	Soybean	nucleus	80.36	83.87
TraesCS5A01G342600.1	Wheat	cytosol	80.36	83.71
KRH30467	Soybean	nucleus	80.18	83.68
PGSC0003DMT400033155	Potato	cytosol	53.64	83.57
CDY71043	Canola	cytosol	47.82	83.49
CDY16573	Canola	cytosol	80.0	83.49
Bra002337.1-P	Field mustard	cytosol	80.0	83.49
TraesCS5B01G341900.1	Wheat	cytosol	80.55	83.43
CDX92428	Canola	cytosol	79.82	83.3
CDX70950	Canola	cytosol	79.82	83.3
CDY72106	Canola	cytosol	32.0	83.02
CDY09085	Canola	cytosol	79.45	82.92
CDY72126	Canola	cytosol	31.82	82.55
AT5G20890.1	Thale cress	cytosol	79.09	82.54
PGSC0003DMT400050534	Potato	cytosol	46.91	81.65
HORVU5Hr1G085530.1	Barley	mitochondrion	80.36	80.51
HORVU4Hr1G068820.1	Barley	cytosol	80.73	79.29
TraesCS3B01G595300.1	Wheat	cytosol	18.55	75.56
Zm00001d040688_P001	Maize	cytosol	34.91	68.33
Bra006584.1-P	Field mustard	cytosol	80.18	58.96
CDX88835	Canola	mitochondrion	80.55	58.29
Zm00001d052882_P001	Maize	plastid	36.73	39.84
GSMUA_Achr3P20910_001	Banana	cytosol	23.09	36.71
GSMUA_Achr2P21510_001	Banana	cytosol	31.82	34.11
GSMUA_Achr11P...	Banana	cytosol	34.0	33.88
GSMUA_Achr2P01090_001	Banana	cytosol	21.45	32.69
GSMUA_AchrUn_...	Banana	cytosol	31.45	32.34
GSMUA_Achr6P06770_001	Banana	cytosol	28.0	31.88
GSMUA_Achr8P16590_001	Banana	plastid	35.09	31.85
GSMUA_Achr6P09540_001	Banana	cytosol	19.09	28.61
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	14.0	28.1
GSMUA_Achr6P23290_001	Banana	cytosol	27.27	26.93
GSMUA_Achr4P16540_001	Banana	cytosol	26.18	26.92
GSMUA_Achr1P14710_001	Banana	cytosol	26.18	26.92
GSMUA_Achr5P09040_001	Banana	cytosol	26.91	26.57
GSMUA_Achr9P07660_001	Banana	cytosol	0.73	25.0
GSMUA_Achr8P04580_001	Banana	cytosol	24.18	24.45
GSMUA_Achr3P25570_001	Banana	cytosol	24.18	24.45

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.50.7.10	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr3G24440_001	EnsemblPlants:GSMUA_Achr3P24440_001	EnsemblPlants:GSMUA_Achr3T24440_001
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0SHG0	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI000294D401	:

Description

T-complex protein 1 subunit beta [Source:GMGC_GENE;Acc:GSMUA_Achr3G24440_001]

Coordinates

chr3:-:24963205..24970476

Molecular Weight (calculated)

59593.2 Da

IEP (calculated)

6.028

GRAVY (calculated)

-0.111

Length

550 amino acids

Sequence
(BLAST)

001: MATALSSPVT LVCSLDVRGF LESVLGFWIS GEVQERKPRV ERLLKDEATE EKGDRARMAS FVGAMAIADL VKTTLGPKGM DKILQSTGRG HNVTVTNDGA
101: TILKSLHIDN PAAKVLIDIS KVQDDEVGDG TTSVVVLAGE LLREAEKLVN KKIHPMTIIA GYRLAAECAR NALLQKAKDN KRDPDKFKSD LMKIAMTTLS
201: SKILSQDKEQ FAKLAVDAVL RLKLNLPEFH SVGSTNLESI HILKKAGGSL KDSFLDEGFI LDKKIGIGQP KHIENAKILV ANTAMDTDKV KIYGARVRVD
301: SMAKVAEIEG AEKEKMREKE LFADAGILAI EHADFEGIER LALVTGGEIA STFDNPESVK LGHCKLIEEI MIGEDKLIHF SGVEMGQACT IVLRGASSHV
401: LDEAERSLHD ALCVLSQTVN DSRVLLGGGW PEMVMAKEVD DLARKTPGKK SHAIEAFSHA LQAIPTIIAD NAGVDSAELI SQLRAEHHND TTNAGIDIIS
501: GGVGDMEKLG ISESFKVKQG VLLSATEAAE MILRVDEIIT CAPRKRENRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.