Factsheet for GSMUA_Achr6P06770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P01800_001
GSMUA_Achr3P24440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	GSMUA_Achr2P01800_001	AT5G20890.1	21798944
AT1G24510.1	GSMUA_Achr3P24440_001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073555	Potato	cytosol	50.52	93.49
PGSC0003DMT400027968	Potato	cytosol	39.96	88.13
GSMUA_AchrUn_...	Banana	cytosol	94.82	85.61
HORVU1Hr1G054530.14	Barley	cytosol	50.72	83.05
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	91.51	82.62
EER97880	Sorghum	cytosol	91.51	82.62
EER88530	Sorghum	cytosol	91.51	82.62
Solyc05g013990.2.1	Tomato	nucleus	91.3	82.43
TraesCS1D01G216600.1	Wheat	cytosol	91.1	82.24
TraesCS7A01G358400.1	Wheat	cytosol, unclear	91.1	82.24
TraesCS7B01G269300.2	Wheat	cytosol	91.1	82.24
TraesCS1B01G227600.1	Wheat	cytosol	90.68	81.87
TraesCS7D01G364400.2	Wheat	cytosol	90.68	81.87
KRH31372	Soybean	nucleus	90.27	81.5
KRG97508	Soybean	cytosol, nucleus	90.27	81.5
HORVU7Hr1G088080.1	Barley	cytosol	90.68	81.41
CDY36138	Canola	cytosol	89.86	81.12
CDY54836	Canola	cytosol	89.65	80.93
Zm00001d007960_P001	Maize	cytosol	91.72	80.84
Zm00001d018694_P002	Maize	cytosol	91.72	80.84
CDY51593	Canola	cytosol	89.65	80.78
Bra010965.1-P	Field mustard	cytosol	89.44	80.75
Bra012506.1-P	Field mustard	cytosol	89.44	80.75
Bra032797.1-P	Field mustard	cytosol	89.44	80.75
CDY03881	Canola	cytosol	89.44	80.75
AT1G24510.1	Thale cress	cytosol	89.23	80.56
CDX84951	Canola	cytosol	89.03	80.37
VIT_12s0028g00350.t01	Wine grape	cytosol	88.41	79.81
TraesCS1A01G213800.1	Wheat	cytosol	64.18	78.48
VIT_01s0137g00250.t01	Wine grape	cytosol	92.96	67.82
GSMUA_Achr3P20910_001	Banana	cytosol	25.47	35.55
GSMUA_Achr6P09540_001	Banana	cytosol	25.67	33.79
GSMUA_Achr2P01800_001	Banana	cytosol	32.92	30.17
GSMUA_Achr2P21510_001	Banana	cytosol	31.06	29.24
GSMUA_Achr11P...	Banana	cytosol	32.09	28.08
GSMUA_Achr3P24440_001	Banana	peroxisome	31.88	28.0
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	15.73	27.74
GSMUA_Achr5P09040_001	Banana	cytosol	31.26	27.11
GSMUA_Achr6P23290_001	Banana	cytosol	31.06	26.93
GSMUA_Achr2P01090_001	Banana	cytosol	18.63	24.93
GSMUA_Achr8P16590_001	Banana	plastid	31.06	24.75
GSMUA_Achr1P14710_001	Banana	cytosol	27.12	24.49
GSMUA_Achr4P16540_001	Banana	cytosol	27.12	24.49
GSMUA_Achr3P25570_001	Banana	cytosol	23.81	21.14
GSMUA_Achr8P04580_001	Banana	cytosol	23.6	20.96
GSMUA_Achr9P07660_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr6G06770_001	EnsemblPlants:GSMUA_Achr6P06770_001
EnsemblPlants:GSMUA_Achr6T06770_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0T4S6
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	UniParc:UPI000295C256

Description

T-complex protein 1 subunit epsilon [Source:GMGC_GENE;Acc:GSMUA_Achr6G06770_001]

Coordinates

chr6:-:4595620..4604150

Molecular Weight (calculated)

53480.8 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.151

Length

483 amino acids

Sequence
(BLAST)

001: MDKMLQSPDG DVVITNDGAT ILEQMDVDNQ IAKLMVELSR SQDYEIGDGT TGVVVLAGAL LEQAEKLLER GIHPIRISEG YEMASKLSVE HLESISQKFE
101: FSVTNIEPLV QTCMTTLSSK IVNRCKRALA EIAVKAVLAV ADLERKDVNL ELIKVEGKVG GKLEDTELIY GILVDKDMSH PQMPKRIEDA NIAILTCPFE
201: PPKPKTKHKI DIDTVEKFQT LRQQEQNYFD DMVQKCKDVG ATLVICQWGF DDEANHLLMH RNLPAVRWVG GVELELIAIA TGGRIVPRFQ ELTTEKLGKA
301: GLVREKSFGT TKDRMLYIEH CANSRAVTIF IRGGNKMMIE ETKRSLHDAL CVARNLIRNN SIVYGGGSAE ISCSIAVEAA ADRYPGVEQY AIRSFAEALD
401: SIPMALAENS GLPPIDTLTA VKSQQIKEGN PYCGIDCNDV GTNNMREQNV FETLIGKQQQ ILLATQVVKM ILKIDDVITP AEY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.