Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36138 | Canola | cytosol | 99.63 | 99.63 |
| Bra010965.1-P | Field mustard | cytosol | 99.44 | 99.44 |
| CDY51593 | Canola | cytosol | 98.69 | 98.51 |
| AT1G24510.1 | Thale cress | cytosol | 98.5 | 98.5 |
| CDY03881 | Canola | cytosol | 98.32 | 98.32 |
| CDX84951 | Canola | cytosol | 97.94 | 97.94 |
| PGSC0003DMT400073555 | Potato | cytosol | 45.05 | 92.34 |
| Solyc05g013990.2.1 | Tomato | nucleus | 92.15 | 92.15 |
| KRH31372 | Soybean | nucleus | 90.84 | 90.84 |
| KRG97508 | Soybean | cytosol, nucleus | 90.65 | 90.65 |
| GSMUA_Achr6P06770_001 | Banana | cytosol | 80.93 | 89.65 |
| EER88530 | Sorghum | cytosol | 89.16 | 89.16 |
| EER97880 | Sorghum | cytosol | 89.16 | 89.16 |
| Os06t0562600-01 | Rice | cytosol, extracellular, plasma membrane | 88.6 | 88.6 |
| VIT_12s0028g00350.t01 | Wine grape | cytosol | 87.66 | 87.66 |
| GSMUA_AchrUn_... | Banana | cytosol | 87.48 | 87.48 |
| TraesCS7A01G358400.1 | Wheat | cytosol, unclear | 87.1 | 87.1 |
| TraesCS7B01G269300.2 | Wheat | cytosol | 87.1 | 87.1 |
| TraesCS7D01G364400.2 | Wheat | cytosol | 87.1 | 87.1 |
| TraesCS1A01G213800.1 | Wheat | cytosol | 64.11 | 86.84 |
| HORVU7Hr1G088080.1 | Barley | cytosol | 87.29 | 86.8 |
| TraesCS1D01G216600.1 | Wheat | cytosol | 86.54 | 86.54 |
| Zm00001d018694_P002 | Maize | cytosol | 88.6 | 86.5 |
| Zm00001d007960_P001 | Maize | cytosol | 88.22 | 86.13 |
| TraesCS1B01G227600.1 | Wheat | cytosol | 85.98 | 85.98 |
| HORVU1Hr1G054530.14 | Barley | cytosol | 43.93 | 79.66 |
| VIT_01s0137g00250.t01 | Wine grape | cytosol | 91.22 | 73.72 |
| CDY72126 | Canola | cytosol | 16.26 | 41.04 |
| CDY72106 | Canola | cytosol | 16.07 | 40.57 |
| CDY11302 | Canola | cytosol | 8.97 | 37.5 |
| CDY43747 | Canola | cytosol | 8.97 | 37.5 |
| CDY18509 | Canola | cytosol | 36.45 | 36.72 |
| CDX92212 | Canola | cytosol, plastid | 36.45 | 36.59 |
| CDY24438 | Canola | cytosol, plastid | 36.26 | 36.4 |
| CDX95541 | Canola | cytosol, plastid | 36.26 | 36.33 |
| CDY47913 | Canola | cytosol | 16.07 | 32.95 |
| CDY09085 | Canola | cytosol | 31.4 | 31.88 |
| CDX70950 | Canola | cytosol | 31.4 | 31.88 |
| CDY16573 | Canola | cytosol | 31.03 | 31.5 |
| CDX92428 | Canola | cytosol | 31.03 | 31.5 |
| CDX82264 | Canola | cytosol | 31.59 | 31.01 |
| CDY42227 | Canola | cytosol | 31.59 | 31.01 |
| CDY36063 | Canola | cytosol | 31.59 | 31.01 |
| CDY24564 | Canola | cytosol | 31.59 | 31.01 |
| CDY25374 | Canola | cytosol | 31.4 | 30.83 |
| CDX74120 | Canola | cytosol | 31.59 | 30.45 |
| CDY18835 | Canola | cytosol | 31.21 | 30.09 |
| CDY33444 | Canola | cytosol | 31.59 | 30.02 |
| CDY49990 | Canola | cytosol | 31.59 | 29.86 |
| CDY67306 | Canola | cytosol | 18.69 | 29.59 |
| CDY01062 | Canola | cytosol | 27.48 | 29.17 |
| CDX70671 | Canola | cytosol | 28.97 | 28.97 |
| CDX78670 | Canola | cytosol | 28.97 | 28.97 |
| CDY08491 | Canola | cytosol | 27.29 | 28.97 |
| CDY53919 | Canola | cytosol | 27.66 | 28.96 |
| CDY26490 | Canola | cytosol | 28.97 | 28.92 |
| CDX73850 | Canola | cytosol | 27.66 | 28.85 |
| CDX69477 | Canola | cytosol | 28.79 | 28.73 |
| CDY51544 | Canola | cytosol | 28.22 | 28.22 |
| CDY28697 | Canola | cytosol | 28.22 | 28.22 |
| CDY71043 | Canola | cytosol | 15.14 | 25.71 |
| CDY50320 | Canola | cytosol | 11.96 | 24.24 |
| CDX79329 | Canola | cytosol | 11.78 | 23.86 |
| CDX92056 | Canola | cytosol | 23.93 | 23.36 |
| CDX74202 | Canola | cytosol, plasma membrane | 23.74 | 23.18 |
| CDY21153 | Canola | cytosol | 23.55 | 23.16 |
| CDY29973 | Canola | cytosol | 23.36 | 22.98 |
| CDY50868 | Canola | cytosol | 22.99 | 22.61 |
| CDY42892 | Canola | cytosol | 22.8 | 22.43 |
| CDX88835 | Canola | mitochondrion | 31.03 | 21.84 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.5 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | GO:A0A078IXH0 | UniProt:A0A078IXH0 |
| EnsemblPlants:CDY54836 | ProteinID:CDY54836 | ProteinID:CDY54836.1 | InterPro:Chap_CCT_epsi | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS |
| InterPro:Cpn60/TCP-1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0051082 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSBRNA2T00014703001 | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 |
| InterPro:IPR027410 | InterPro:IPR027413 | PFAM:PF00118 | PRINTS:PR00304 | ScanProsite:PS00750 | ScanProsite:PS00751 |
| ScanProsite:PS00995 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF178 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 |
| InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02343 | UniParc:UPI0004EBDE80 | : | : | : |
Description
BnaC03g75860DBnaC03g75860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXH0]
Coordinates
chrLK033354:-:58224..61969
Molecular Weight (calculated)
59377.8 Da
IEP (calculated)
5.238
GRAVY (calculated)
-0.204
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDVTISNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYETASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILVDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGMVREKSF GTTKERMLYI EHCANSKAVT IFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NNSIVYGGGA AEITCSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYETASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILVDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGMVREKSF GTTKERMLYI EHCANSKAVT IFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NNSIVYGGGA AEITCSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY
001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY
Arabidopsis Description
CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.