Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031959.1-P | Field mustard | cytosol | 99.08 | 99.08 |
| CDY50868 | Canola | cytosol | 98.9 | 98.9 |
| CDY29973 | Canola | cytosol | 95.96 | 95.96 |
| CDY21153 | Canola | cytosol | 95.77 | 95.77 |
| CDX92056 | Canola | cytosol | 95.96 | 95.26 |
| CDX74202 | Canola | cytosol, plasma membrane | 95.77 | 95.07 |
| AT3G03960.1 | Thale cress | cytosol | 93.93 | 93.08 |
| CDY50320 | Canola | cytosol | 40.99 | 84.47 |
| CDX79329 | Canola | cytosol | 39.89 | 82.2 |
| VIT_08s0007g07460.t01 | Wine grape | cytosol | 81.99 | 81.83 |
| KRH08492 | Soybean | cytosol, endoplasmic reticulum, nucleus | 81.07 | 80.92 |
| KRH70153 | Soybean | nucleus | 80.88 | 80.73 |
| Solyc01g088080.2.1 | Tomato | nucleus | 80.15 | 80.59 |
| Os03t0804800-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 80.51 | 80.22 |
| GSMUA_Achr8P04580_001 | Banana | cytosol | 79.96 | 79.96 |
| GSMUA_Achr3P25570_001 | Banana | cytosol | 79.96 | 79.96 |
| PGSC0003DMT400017609 | Potato | cytosol | 79.41 | 79.85 |
| EES09994 | Sorghum | cytosol | 80.33 | 79.74 |
| Zm00001d052948_P001 | Maize | cytosol, extracellular, mitochondrion | 80.15 | 79.56 |
| TraesCS4B01G165400.1 | Wheat | cytosol | 77.57 | 78.15 |
| HORVU4Hr1G040660.1 | Barley | cytosol | 77.39 | 77.96 |
| TraesCS4D01G157300.1 | Wheat | cytosol | 76.65 | 77.65 |
| TraesCS4A01G164900.2 | Wheat | cytosol | 77.39 | 77.39 |
| Zm00001d007508_P005 | Maize | cytosol | 79.6 | 75.57 |
| TraesCS6B01G010900.1 | Wheat | mitochondrion, plastid | 71.14 | 72.88 |
| TraesCS6D01G008000.1 | Wheat | cytosol | 74.08 | 70.7 |
| CDY11302 | Canola | cytosol | 7.17 | 30.47 |
| CDY43747 | Canola | cytosol | 7.17 | 30.47 |
| CDY72126 | Canola | cytosol | 11.21 | 28.77 |
| CDY72106 | Canola | cytosol | 11.21 | 28.77 |
| CDY24564 | Canola | cytosol | 27.39 | 27.34 |
| CDY25374 | Canola | cytosol | 27.39 | 27.34 |
| CDX82264 | Canola | cytosol | 27.39 | 27.34 |
| CDY36063 | Canola | cytosol | 27.39 | 27.34 |
| CDY42227 | Canola | cytosol | 27.21 | 27.16 |
| CDY16573 | Canola | cytosol | 25.55 | 26.38 |
| CDY09085 | Canola | cytosol | 25.55 | 26.38 |
| CDX70950 | Canola | cytosol | 25.37 | 26.19 |
| CDX92428 | Canola | cytosol | 25.37 | 26.19 |
| CDY33444 | Canola | cytosol | 27.02 | 26.11 |
| CDX74120 | Canola | cytosol | 26.47 | 25.95 |
| CDY18835 | Canola | cytosol | 26.1 | 25.59 |
| CDY49990 | Canola | cytosol | 26.47 | 25.44 |
| CDY08491 | Canola | cytosol | 23.16 | 25.0 |
| CDX92212 | Canola | cytosol, plastid | 24.45 | 24.95 |
| CDY18509 | Canola | cytosol | 24.26 | 24.86 |
| CDY53919 | Canola | cytosol | 23.35 | 24.85 |
| CDY01062 | Canola | cytosol | 22.98 | 24.8 |
| CDY24438 | Canola | cytosol, plastid | 24.26 | 24.77 |
| CDY71043 | Canola | cytosol | 14.34 | 24.76 |
| CDX73850 | Canola | cytosol | 23.35 | 24.76 |
| CDX95541 | Canola | cytosol, plastid | 24.26 | 24.72 |
| CDY47913 | Canola | cytosol | 11.4 | 23.75 |
| CDY67306 | Canola | cytosol | 14.34 | 23.08 |
| CDY51544 | Canola | cytosol | 22.61 | 22.99 |
| CDY28697 | Canola | cytosol | 22.61 | 22.99 |
| CDY51593 | Canola | cytosol | 22.61 | 22.95 |
| CDY54836 | Canola | cytosol | 22.43 | 22.8 |
| CDY36138 | Canola | cytosol | 22.43 | 22.8 |
| CDY03881 | Canola | cytosol | 22.43 | 22.8 |
| CDX78670 | Canola | cytosol | 22.24 | 22.62 |
| CDX84951 | Canola | cytosol | 22.24 | 22.62 |
| CDX70671 | Canola | cytosol | 22.24 | 22.62 |
| CDY26490 | Canola | cytosol | 22.24 | 22.57 |
| CDX69477 | Canola | cytosol | 22.24 | 22.57 |
| CDX88835 | Canola | mitochondrion | 25.37 | 18.16 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.8 | Gene3D:3.50.7.10 | GO:A0A078HYC6 | UniProt:A0A078HYC6 | EnsemblPlants:CDY42892 |
| ProteinID:CDY42892 | ProteinID:CDY42892.1 | InterPro:Chap_CCT_theta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | ncoils:Coil |
| InterPro:Cpn60/TCP-1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0051082 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSBRNA2T00075620001 | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 |
| InterPro:IPR027410 | InterPro:IPR027413 | PFAM:PF00118 | PRINTS:PR00304 | ScanProsite:PS00750 | PANTHER:PTHR11353 |
| PANTHER:PTHR11353:SF78 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02346 |
| UniParc:UPI0004EE19AB | SEG:seg | : | : | : | : |
Description
BnaC05g47590DBnaC05g47590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYC6]
Coordinates
chrLK032538:+:16848..20314
Molecular Weight (calculated)
58249.9 Da
IEP (calculated)
5.300
GRAVY (calculated)
-0.053
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPHGIQSML KDGYRHLSGL DEAVIKNIEA CKELSTITRT SLGPNGMNKM VINHLDKLFV TNDAGTIVNE LEIQHPAAKI LVLAAKAQQE EIGDGANLTI
101: SFAGELLQNA GELIRAGLHP SDIITGYNKA ITKTVEILEQ LVESGSETMD VRNKDEVVFR MRAAVASKQF GQEEIICSLV ADACIQVCPK NPTNFNVDNV
201: RVAKLLGGGL HNSCIVRGMV LKSDAVGSIK RMEKAKVAVF AGGVDTTATE TKGTVLIHSA EQLENYAKTE EAKVEELIKA VAESGAKVIV SGGSVGEMAL
301: HFCERYKIMV LKISSKFELR RFCRTAGAVA HLKLSRPSPD DLGYVDSIAV EEIGGVTVTI ARNEQGGNSI STVVLRGSTD SILDDLERAV DDGVNTYKAM
401: CRDSRIVPGA AATEIELAQR LKEYANAETG LHSHAILKYA ESFQFVPQTL ADNAGLDAME IIASLYTGHG SGNTKLGIDL EEGACKDVSE TKVWDLFATK
501: LFALKYASDA ACTVLRVDQI IMAKQAGGPR RDLAAAAGAG AEED
101: SFAGELLQNA GELIRAGLHP SDIITGYNKA ITKTVEILEQ LVESGSETMD VRNKDEVVFR MRAAVASKQF GQEEIICSLV ADACIQVCPK NPTNFNVDNV
201: RVAKLLGGGL HNSCIVRGMV LKSDAVGSIK RMEKAKVAVF AGGVDTTATE TKGTVLIHSA EQLENYAKTE EAKVEELIKA VAESGAKVIV SGGSVGEMAL
301: HFCERYKIMV LKISSKFELR RFCRTAGAVA HLKLSRPSPD DLGYVDSIAV EEIGGVTVTI ARNEQGGNSI STVVLRGSTD SILDDLERAV DDGVNTYKAM
401: CRDSRIVPGA AATEIELAQR LKEYANAETG LHSHAILKYA ESFQFVPQTL ADNAGLDAME IIASLYTGHG SGNTKLGIDL EEGACKDVSE TKVWDLFATK
501: LFALKYASDA ACTVLRVDQI IMAKQAGGPR RDLAAAAGAG AEED
001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED
Arabidopsis Description
CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.