CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69477
CDX70671
CDX73850
CDX78670
CDX84951
CDY01062
CDY03881
CDY08491
CDY26490
CDY36138
CDY51593
CDY53919
CDY54836
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	CDX84951	AT1G24510.1	21798944
AT3G03960.1	CDY03881	AT1G24510.1	21798944
AT3G03960.1	CDY36138	AT1G24510.1	21798944
AT3G03960.1	CDY51593	AT1G24510.1	21798944
AT3G03960.1	CDY54836	AT1G24510.1	21798944
AT3G03960.1	CDX73850	AT3G11830.1	21798944
AT3G03960.1	CDY01062	AT3G11830.1	21798944
AT3G03960.1	CDY08491	AT3G11830.1	21798944
AT3G03960.1	CDY53919	AT3G11830.1	21798944
AT3G03960.1	CDY67306	AT3G11830.1	21798944
AT3G03960.1	CDX69477	AT5G16070.1	21798944
AT3G03960.1	CDX70671	AT5G16070.1	21798944
AT3G03960.1	CDX78670	AT5G16070.1	21798944
AT3G03960.1	CDY26490	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001094.1-P	Field mustard	cytosol	100.0	100.0
CDX92056	Canola	cytosol	99.45	99.45
CDY21153	Canola	cytosol	97.99	98.71
CDY29973	Canola	cytosol	97.81	98.53
CDY42892	Canola	cytosol	95.07	95.77
AT3G03960.1	Thale cress	cytosol	95.62	95.45
CDY50868	Canola	cytosol	94.71	95.4
CDY50320	Canola	cytosol	42.15	87.5
CDX79329	Canola	cytosol	41.06	85.23
VIT_08s0007g07460.t01	Wine grape	cytosol	83.03	83.49
Solyc01g088080.2.1	Tomato	nucleus	81.57	82.62
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	81.75	82.2
KRH70153	Soybean	nucleus	81.57	82.02
GSMUA_Achr3P25570_001	Banana	cytosol	81.39	81.99
PGSC0003DMT400017609	Potato	cytosol	80.84	81.89
GSMUA_Achr8P04580_001	Banana	cytosol	81.2	81.8
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	81.02	81.32
EES09994	Sorghum	cytosol	80.84	80.84
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	80.66	80.66
TraesCS4B01G165400.1	Wheat	cytosol	77.74	78.89
HORVU4Hr1G040660.1	Barley	cytosol	77.55	78.7
TraesCS4D01G157300.1	Wheat	cytosol	76.82	78.4
TraesCS4A01G164900.2	Wheat	cytosol	77.55	78.12
Zm00001d007508_P005	Maize	cytosol	80.11	76.61
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	71.35	73.63
TraesCS6D01G008000.1	Wheat	cytosol	73.72	70.88
CDY43747	Canola	cytosol	7.3	31.25
CDY11302	Canola	cytosol	7.3	31.25
CDY72126	Canola	cytosol	11.31	29.25
CDY72106	Canola	cytosol	11.31	29.25
CDY24564	Canola	cytosol	27.74	27.89
CDX82264	Canola	cytosol	27.74	27.89
CDY36063	Canola	cytosol	27.74	27.89
CDY25374	Canola	cytosol	27.74	27.89
CDY42227	Canola	cytosol	27.55	27.71
CDX74120	Canola	cytosol	27.19	26.85
CDY33444	Canola	cytosol	27.37	26.64
CDY18835	Canola	cytosol	26.82	26.49
CDY49990	Canola	cytosol	27.19	26.33
CDY09085	Canola	cytosol	25.0	26.0
CDX92428	Canola	cytosol	24.82	25.81
CDY16573	Canola	cytosol	24.82	25.81
CDX70950	Canola	cytosol	24.82	25.81
CDX92212	Canola	cytosol, plastid	24.82	25.52
CDY18509	Canola	cytosol	24.64	25.42
CDY08491	Canola	cytosol	23.36	25.4
CDY01062	Canola	cytosol	23.36	25.4
CDY24438	Canola	cytosol, plastid	24.64	25.33
CDY53919	Canola	cytosol	23.54	25.24
CDX73850	Canola	cytosol	23.54	25.15
CDX95541	Canola	cytosol, plastid	24.45	25.09
CDY47913	Canola	cytosol	11.86	24.9
CDY51593	Canola	cytosol	23.36	23.88
CDY71043	Canola	cytosol	13.69	23.81
CDY54836	Canola	cytosol	23.18	23.74
CDY36138	Canola	cytosol	23.18	23.74
CDY03881	Canola	cytosol	23.18	23.74
CDY67306	Canola	cytosol	14.6	23.67
CDX84951	Canola	cytosol	22.99	23.55
CDY51544	Canola	cytosol	22.81	23.36
CDY28697	Canola	cytosol	22.81	23.36
CDX78670	Canola	cytosol	22.45	22.99
CDX70671	Canola	cytosol	22.45	22.99
CDY26490	Canola	cytosol	22.45	22.95
CDX69477	Canola	cytosol	22.45	22.95
CDX88835	Canola	mitochondrion	24.64	17.76

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	GO:A0A078CBH2	EnsemblPlants:CDX74202	ProteinID:CDX74202
ProteinID:CDX74202.1	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00111970001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	UniParc:UPI000254094A	SEG:seg	:	:

Description

BnaA03g28450D

Coordinates

chrLK031800:-:1758184..1761575

Molecular Weight (calculated)

58818.7 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.050

Length

548 amino acids

Sequence
(BLAST)

001: MTMSMQPYGI QSMLKEGYRH LSGLDEAVIK NIEACKELST ITRTSLGPNG MNKMVINHLD KLFVTNDAAT IVNELEIQHP AAKILVLAAK AQQEEIGDGA
101: NLTISFAGEL LQNAEELIRM GLHPSEIICG YNKAIIKVVE VLEQLVESGS ETMDVRSKDE VVSRMRAAVA SKQFGQEEII CSLVADACIQ VCPKNPTNFN
201: VDNVRVAKLL GGGLHNSCIV RGMVLKSDAV GSIKRMEKAK VAVFAGGVDT TATETKGTVL IHSAEQLENY AKTEEAKVEE LIKDVAESGA KVIVSGGSVG
301: EMALHFCERY KIMVLKISSK FELRRFCRAA GAVAHLKLSR PSPDDLGYVD SISVEEIGGV TVTIARNEQG GNSISTVVLR GSTDSILDDL ERAVDDGVNT
401: YKAMCRDSRI VPGAAATEIE LAQRLKEYAN AETGLDKYAI SKYAESFEFV PKTLADNAGL NAMEIIASLY TGHGSGNTKL GIDLEEGACK DVSETKVWDL
501: FATKLFALKY ASDAACTVLR VDQIIMAKQA GGPRRDAAAA AGAGAEED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.