Factsheet for GSMUA_Achr3P25570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P14710_001
GSMUA_Achr2P21510_001
GSMUA_Achr4P16540_001
GSMUA_Achr6P06770_001
GSMUA_Achr8P16590_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	GSMUA_Achr6P06770_001	AT1G24510.1	21798944
AT3G03960.1	GSMUA_AchrUn_...	AT1G24510.1	21798944
AT3G03960.1	GSMUA_Achr2P21510_001	AT3G11830.1	21798944
AT3G03960.1	GSMUA_Achr8P16590_001	AT3G11830.1	21798944
AT3G03960.1	GSMUA_Achr1P14710_001	AT5G16070.1	21798944
AT3G03960.1	GSMUA_Achr4P16540_001	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04580_001	Banana	cytosol	94.3	94.3
VIT_08s0007g07460.t01	Wine grape	cytosol	89.71	89.54
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	87.68	87.52
PGSC0003DMT400017609	Potato	cytosol	86.76	87.25
EES09994	Sorghum	cytosol	87.68	87.04
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	87.32	87.0
Solyc01g088080.2.1	Tomato	nucleus	86.4	86.88
KRH70153	Soybean	nucleus	86.76	86.61
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	86.95	86.31
TraesCS4B01G165400.1	Wheat	cytosol	84.38	85.0
HORVU4Hr1G040660.1	Barley	cytosol	84.01	84.63
TraesCS4A01G164900.2	Wheat	cytosol	84.38	84.38
TraesCS4D01G157300.1	Wheat	cytosol	83.09	84.17
Zm00001d007508_P005	Maize	cytosol	86.95	82.55
CDY29973	Canola	cytosol	82.17	82.17
Bra036422.1-P	Field mustard	cytosol	82.17	82.17
CDY21153	Canola	cytosol	81.99	81.99
Bra001094.1-P	Field mustard	cytosol	81.99	81.39
CDX74202	Canola	cytosol, plasma membrane	81.99	81.39
CDX92056	Canola	cytosol	81.99	81.39
Bra031959.1-P	Field mustard	cytosol	80.51	80.51
AT3G03960.1	Thale cress	cytosol	81.25	80.51
CDY42892	Canola	cytosol	79.96	79.96
CDY50868	Canola	cytosol	79.96	79.96
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	77.57	79.47
TraesCS6D01G008000.1	Wheat	cytosol	80.51	76.84
CDY50320	Canola	cytosol	36.03	74.24
CDX79329	Canola	cytosol	34.93	71.97
GSMUA_Achr3P20910_001	Banana	cytosol	17.83	28.03
GSMUA_Achr11P...	Banana	cytosol	28.12	27.72
GSMUA_Achr6P23290_001	Banana	cytosol	27.57	26.93
GSMUA_Achr5P09040_001	Banana	cytosol	27.21	26.57
GSMUA_Achr2P01800_001	Banana	cytosol	25.37	26.19
GSMUA_Achr2P01090_001	Banana	cytosol	17.1	25.76
GSMUA_AchrUn_...	Banana	cytosol	25.0	25.42
GSMUA_Achr4P16540_001	Banana	cytosol	24.82	25.23
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	12.68	25.18
GSMUA_Achr9P07660_001	Banana	cytosol	0.74	25.0
GSMUA_Achr1P14710_001	Banana	cytosol	24.26	24.67
GSMUA_Achr2P21510_001	Banana	cytosol	22.98	24.37
GSMUA_Achr3P24440_001	Banana	peroxisome	24.45	24.18
GSMUA_Achr8P16590_001	Banana	plastid	26.84	24.09
GSMUA_Achr6P06770_001	Banana	cytosol	21.14	23.81
GSMUA_Achr6P09540_001	Banana	cytosol	15.99	23.71

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr3G25570_001	EnsemblPlants:GSMUA_Achr3P25570_001
EnsemblPlants:GSMUA_Achr3T25570_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0SHS3
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	UniParc:UPI00029682DA

Description

T-complex protein 1 subunit theta [Source:GMGC_GENE;Acc:GSMUA_Achr3G25570_001]

Coordinates

chr3:-:25701540..25708908

Molecular Weight (calculated)

58389.4 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.015

Length

544 amino acids

Sequence
(BLAST)

001: MAFGLPGYGI QAMLKEGHKH LSGLDEAVLK NIDACKQLSV ITRTSLGPNG MNKMVINHLD KLFVTNDAAT IVNELEVQHP AAKILVLAGK AQQEEIGDGA
101: NLTISFAGEL LQNAEELIRM GLHPSEIISG YTKAINKTIE ILDELLEKGS ETMDVRSKEE VVSRMKAAVA SKQYGQEDLL CPIIADACIQ VCPKNPANFN
201: VDNVRVAKLL GGGLHNSTVI RGMVVKNDAV GTIKRVEKAR IAVFAGGVDT SATETKGTVL IQSAEQLENY AKTEEAKVEE LIKAVAESGA KVIVSGAAVG
301: DMALHFCERY KLMVLKISSK FELRRFCRTT GAVALLKLSQ PSPDDLGYAD SISVEEVGGV RVTIVKNEEG GNSVSTVVLR GSTDSILDDL ERAIDDGVNA
401: YKAMCRDSRT VPGAAATEIE LARKLKEFSL KETGLDQYAI AKFAESFEMV PKTLAENAGL NAIEIISSLY AEHAAGNVKV GIDLEEGVCK DVSTINIWDL
501: YVTKFFALKY AADAACTVLR VDQIIMAKPA GGPKRDPAAG MDED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.