Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73850 | Canola | cytosol | 99.02 | 98.64 |
| CDY08491 | Canola | cytosol | 97.06 | 98.41 |
| CDY01062 | Canola | cytosol | 96.87 | 98.21 |
| CDY11302 | Canola | cytosol | 24.27 | 96.88 |
| CDY43747 | Canola | cytosol | 24.27 | 96.88 |
| CDY67306 | Canola | cytosol | 63.99 | 96.75 |
| Bra038682.1-P | Field mustard | cytosol | 98.63 | 90.81 |
| Os06t0687700-01 | Rice | plasma membrane | 53.42 | 90.4 |
| AT3G11830.1 | Thale cress | cytosol | 97.65 | 89.59 |
| GSMUA_Achr2P21510_001 | Banana | cytosol | 89.82 | 89.47 |
| Solyc06g065520.2.1 | Tomato | nucleus, plastid | 91.0 | 83.33 |
| PGSC0003DMT400067201 | Potato | cytosol | 90.8 | 83.15 |
| KRH14704 | Soybean | cytosol, endoplasmic reticulum, nucleus | 90.61 | 82.68 |
| EES04545 | Sorghum | cytosol | 90.41 | 82.5 |
| VIT_00s0670g00010.t01 | Wine grape | cytosol | 90.61 | 82.38 |
| KRH73433 | Soybean | endoplasmic reticulum, nucleus | 89.82 | 81.96 |
| Zm00001d053857_P002 | Maize | cytosol | 89.63 | 81.79 |
| TraesCS6A01G131400.1 | Wheat | cytosol, golgi, mitochondrion, unclear | 88.65 | 81.33 |
| TraesCS6D01G121300.1 | Wheat | cytosol | 88.65 | 81.33 |
| TraesCS6B01G159800.1 | Wheat | cytosol | 88.45 | 81.15 |
| HORVU6Hr1G025270.1 | Barley | cytosol | 88.26 | 80.97 |
| GSMUA_Achr8P16590_001 | Banana | plastid | 89.43 | 75.41 |
| CDY47913 | Canola | cytosol | 36.79 | 72.03 |
| CDY72106 | Canola | cytosol | 15.85 | 38.21 |
| CDY72126 | Canola | cytosol | 15.85 | 38.21 |
| CDX70950 | Canola | cytosol | 34.25 | 33.21 |
| CDY16573 | Canola | cytosol | 34.25 | 33.21 |
| CDY09085 | Canola | cytosol | 34.25 | 33.21 |
| CDX92428 | Canola | cytosol | 34.25 | 33.21 |
| CDY42227 | Canola | cytosol | 34.83 | 32.66 |
| CDY25374 | Canola | cytosol | 34.05 | 31.93 |
| CDY24564 | Canola | cytosol | 33.86 | 31.74 |
| CDX82264 | Canola | cytosol | 33.66 | 31.56 |
| CDY36063 | Canola | cytosol | 33.66 | 31.56 |
| CDY33444 | Canola | cytosol | 34.64 | 31.44 |
| CDY71043 | Canola | cytosol | 18.2 | 29.52 |
| CDY18509 | Canola | cytosol | 30.14 | 29.0 |
| CDY24438 | Canola | cytosol, plastid | 30.14 | 28.89 |
| CDX92212 | Canola | cytosol, plastid | 30.14 | 28.89 |
| CDX95541 | Canola | cytosol, plastid | 30.14 | 28.84 |
| CDX74120 | Canola | cytosol | 30.72 | 28.29 |
| CDY18835 | Canola | cytosol | 30.72 | 28.29 |
| CDY49990 | Canola | cytosol | 30.72 | 27.74 |
| CDY54836 | Canola | cytosol | 28.96 | 27.66 |
| CDY36138 | Canola | cytosol | 28.77 | 27.48 |
| CDY03881 | Canola | cytosol | 28.57 | 27.29 |
| CDX84951 | Canola | cytosol | 28.57 | 27.29 |
| CDY51593 | Canola | cytosol | 28.57 | 27.24 |
| CDX74202 | Canola | cytosol, plasma membrane | 25.24 | 23.54 |
| CDX92056 | Canola | cytosol | 25.05 | 23.36 |
| CDY50868 | Canola | cytosol | 24.85 | 23.35 |
| CDY42892 | Canola | cytosol | 24.85 | 23.35 |
| CDY29973 | Canola | cytosol | 24.66 | 23.16 |
| CDY21153 | Canola | cytosol | 24.66 | 23.16 |
| CDX88835 | Canola | mitochondrion | 34.25 | 23.03 |
| CDX70671 | Canola | cytosol | 23.68 | 22.62 |
| CDX78670 | Canola | cytosol | 23.68 | 22.62 |
| CDX69477 | Canola | cytosol | 23.68 | 22.57 |
| CDY51544 | Canola | cytosol | 23.48 | 22.43 |
| CDY28697 | Canola | cytosol | 23.48 | 22.43 |
| CDY26490 | Canola | cytosol | 23.48 | 22.39 |
| CDY50320 | Canola | cytosol | 10.37 | 20.08 |
| CDX79329 | Canola | cytosol | 9.98 | 19.32 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.7 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | GO:A0A078IWZ6 | UniProt:A0A078IWZ6 |
| EnsemblPlants:CDY53919 | ProteinID:CDY53919 | ProteinID:CDY53919.1 | InterPro:Chap_CCT_eta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS |
| InterPro:Cpn60/TCP-1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0051082 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSBRNA2T00011693001 | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 |
| InterPro:IPR027410 | InterPro:IPR027413 | PFAM:PF00118 | PRINTS:PR00304 | ScanProsite:PS00751 | ScanProsite:PS00995 |
| PANTHER:PTHR11353 | PANTHER:PTHR11353:SF22 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf |
| TIGRFAMs:TIGR02345 | UniParc:UPI0004EDF5AB | SEG:seg | : | : | : |
Description
BnaC03g73500DBnaC03g73500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWZ6]
Coordinates
chrLK033251:+:4681..8861
Molecular Weight (calculated)
54992.0 Da
IEP (calculated)
6.056
GRAVY (calculated)
-0.104
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKLIHDDKG SVTISNDGAT IMKLLDIVHP AAKILVDIAK SQDSEVGDGT TTVVLLAAEF LKEAKPFVED GVHSQNLIRS YRTASTLAIE KVKELAVSIE
101: GKSVEEKKGL LAKCAATTLS SKLIGGEKEF FATMVVDAVM AIGDDDRLSL IGIKKVPGGN MRDSFLVDGV AFKKTFSYAG FEQQPKKFLI PKILLLNIEL
201: ELKSEKENAE IRLSDPSQYQ SIVDAEWNII YDKLDKCVES GAKVVLSRLA IGDLATQYFA DRDIFCAGRV AEEDLNRVAA AAGGTVQTSV NNIIPEVLGT
301: CEIFEEKQVG GERFNIFSGC PSGRTATIVL RGGADQFIEE AERSLHDAIM IVRRAVKNST VVPGGGAIDM EVSKYLRQHS RTIAGKPQLF INSYAKALEV
401: IPRQLCDNAG FDATDVLNKL RQKHAMQSGE GASYGVDINT GGIADSYANF VWEPAVVKIN AINAATEAAC LILSVDETVK NPKSQSAQGD AAAGAMGRGR
501: GGGRGRGMRR R
101: GKSVEEKKGL LAKCAATTLS SKLIGGEKEF FATMVVDAVM AIGDDDRLSL IGIKKVPGGN MRDSFLVDGV AFKKTFSYAG FEQQPKKFLI PKILLLNIEL
201: ELKSEKENAE IRLSDPSQYQ SIVDAEWNII YDKLDKCVES GAKVVLSRLA IGDLATQYFA DRDIFCAGRV AEEDLNRVAA AAGGTVQTSV NNIIPEVLGT
301: CEIFEEKQVG GERFNIFSGC PSGRTATIVL RGGADQFIEE AERSLHDAIM IVRRAVKNST VVPGGGAIDM EVSKYLRQHS RTIAGKPQLF INSYAKALEV
401: IPRQLCDNAG FDATDVLNKL RQKHAMQSGE GASYGVDINT GGIADSYANF VWEPAVVKIN AINAATEAAC LILSVDETVK NPKSQSAQGD AAAGAMGRGR
501: GGGRGRGMRR R
001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
Arabidopsis Description
CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.