Factsheet for Solyc06g065520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088080.2.1
Solyc07g042170.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT3G11830.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT3G11830.1	Solyc01g088080.2.1	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067201	Potato	cytosol	99.82	99.82
VIT_00s0670g00010.t01	Wine grape	cytosol	93.73	93.06
CDY01062	Canola	cytosol	83.33	92.26
CDY08491	Canola	cytosol	83.33	92.26
AT3G11830.1	Thale cress	cytosol	91.76	91.92
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	91.94	91.61
Bra038682.1-P	Field mustard	cytosol	91.04	91.53
CDX73850	Canola	cytosol	84.05	91.42
GSMUA_Achr2P21510_001	Banana	cytosol	83.87	91.23
Os06t0687700-01	Rice	plasma membrane	49.28	91.06
CDY53919	Canola	cytosol	83.33	91.0
Bra034807.1-P	Field mustard	cytosol	86.56	90.96
EES04545	Sorghum	cytosol	91.22	90.89
KRH73433	Soybean	endoplasmic reticulum, nucleus	91.22	90.89
Zm00001d053857_P002	Maize	cytosol	90.86	90.54
TraesCS6D01G121300.1	Wheat	cytosol	90.14	90.31
Bra001423.1-P	Field mustard	cytosol	90.5	90.18
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	89.96	90.13
TraesCS6B01G159800.1	Wheat	cytosol	89.96	90.13
HORVU6Hr1G025270.1	Barley	cytosol	89.78	89.95
CDY67306	Canola	cytosol	54.12	89.35
GSMUA_Achr8P16590_001	Banana	plastid	92.65	85.31
Solyc11g069000.1.1	Tomato	extracellular	33.69	35.74
Solyc01g090750.2.1	Tomato	nucleus	33.87	34.68
Solyc03g118910.1.1	Tomato	plastid	30.65	31.73
Solyc05g056310.2.1	Tomato	extracellular, plastid	30.47	30.52
Solyc05g013990.2.1	Tomato	nucleus	29.21	30.47
Solyc01g088080.2.1	Tomato	nucleus	25.09	25.88
Solyc02g063090.2.1	Tomato	nucleus, unclear	24.73	25.79
Solyc02g085790.2.1	Tomato	extracellular	24.73	25.79

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0046686	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:K4C7I1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	EnsemblPlantsGene:Solyc06g065520.2	EnsemblPlants:Solyc06g065520.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI0002765775
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:40897572..40905770

Molecular Weight (calculated)

60123.4 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.113

Length

558 amino acids

Sequence
(BLAST)

001: MSAMMQPQII LLKEGTDTSQ GKAQLVSNIN ACMAVADVVR TTLGPRGMDK LIHDDKGNTT ISNDGATIMK LLDIIHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAGEFLKE AKPFVEEGVH PQNLIRSYRT ASNMAIEKVK ELAVSIEGKS LEEKKSLLAK CAATTLSSKL IGGEKEFFAS MVVDAVLAIG TDDRLNMIGI
201: KKVPGGTMRD SFLVNGVAFK KTFSYAGFEQ QPKKFVNPKI LLLNIELELK SEKENAEIRL SDPAQYQSIV DAEWNIIYDK LDKCVKSGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVSEE DLQRVAAAAG GTVQTTVNNV IDEVLGSCEI FEEKQVGNER FNIFSGCPSG KTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS RFLRHHARTI QGKSQLFINS YAKALEIIPR QLCDNAGFDA TDVLNKLRQK HALPSGEGAP YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAA SAMGGGRGRG RGRGMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.