Factsheet for Solyc05g013990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g069000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	Solyc11g069000.1.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027968	Potato	cytosol	39.81	97.26
KRH31372	Soybean	nucleus	94.21	94.21
KRG97508	Soybean	cytosol, nucleus	94.02	94.02
EER97880	Sorghum	cytosol	92.15	92.15
CDY36138	Canola	cytosol	92.15	92.15
CDY54836	Canola	cytosol	92.15	92.15
Bra010965.1-P	Field mustard	cytosol	91.96	91.96
EER88530	Sorghum	cytosol	91.96	91.96
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	91.78	91.78
AT1G24510.1	Thale cress	cytosol	91.78	91.78
CDY51593	Canola	cytosol	91.78	91.6
Bra012506.1-P	Field mustard	cytosol	91.59	91.59
CDY03881	Canola	cytosol	91.4	91.4
GSMUA_Achr6P06770_001	Banana	cytosol	82.43	91.3
CDX84951	Canola	cytosol	91.22	91.22
Bra032797.1-P	Field mustard	cytosol	91.03	91.03
GSMUA_AchrUn_...	Banana	cytosol	90.65	90.65
TraesCS7D01G364400.2	Wheat	cytosol	90.65	90.65
TraesCS7B01G269300.2	Wheat	cytosol	90.65	90.65
TraesCS7A01G358400.1	Wheat	cytosol, unclear	90.65	90.65
VIT_12s0028g00350.t01	Wine grape	cytosol	90.47	90.47
HORVU7Hr1G088080.1	Barley	cytosol	90.84	90.33
Zm00001d018694_P002	Maize	cytosol	91.96	89.78
TraesCS1D01G216600.1	Wheat	cytosol	89.35	89.35
Zm00001d007960_P001	Maize	cytosol	91.4	89.23
TraesCS1A01G213800.1	Wheat	cytosol	65.61	88.86
TraesCS1B01G227600.1	Wheat	cytosol	88.78	88.78
HORVU1Hr1G054530.14	Barley	cytosol	45.42	82.37
VIT_01s0137g00250.t01	Wine grape	cytosol	93.83	75.83
Solyc03g118910.1.1	Tomato	plastid	36.26	35.99
Solyc11g069000.1.1	Tomato	extracellular	33.83	34.41
Solyc01g090750.2.1	Tomato	nucleus	31.59	31.01
Solyc05g056310.2.1	Tomato	extracellular, plastid	31.21	29.98
Solyc06g065520.2.1	Tomato	nucleus, plastid	30.47	29.21
Solyc02g085790.2.1	Tomato	extracellular	26.73	26.73
Solyc02g063090.2.1	Tomato	nucleus, unclear	26.73	26.73
Solyc01g088080.2.1	Tomato	nucleus	24.67	24.4

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:K4BYC0	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
EnsemblPlantsGene:Solyc05g013990.2	EnsemblPlants:Solyc05g013990.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	UniParc:UPI00027662A9	:

Description

No Description!

Coordinates

chr5:+:7492470..7499923

Molecular Weight (calculated)

59170.9 Da

IEP (calculated)

5.578

GRAVY (calculated)

-0.184

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILREQEQ KTRLRGLDAQ KANISAGKAV ARILRTSLGP KGMDKMLQSP DGDVTITNDG ATILEQMDVD NQIGKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAEKLL ERGIHPIRIA EGYEMASRIA VEHLERVAHK FEFGQNDVEP LVQTCMTTLS SKIVNRCKRS MAEIAVKAVL AVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL IYGIIVDKDM SHPQMPKQIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLRLQEQKY FDDMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGIVREKSF GTTKDRMIYI EHCANSRAVT IFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NNSIVYGGGS AEISCSIAVE AAADKHPGVE QYAIRAFADA LDAVPMALAE NSGLQPIETL SAVKSQQIKE NNPCCGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI TPSEY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.