Factsheet for VIT_12s0028g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
golgi 1
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g00480.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	VIT_18s0001g00480.t01	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027968	Potato	cytosol	37.38	91.32
KRH31372	Soybean	nucleus	90.65	90.65
KRG97508	Soybean	cytosol, nucleus	90.65	90.65
Solyc05g013990.2.1	Tomato	nucleus	90.47	90.47
GSMUA_Achr6P06770_001	Banana	cytosol	79.81	88.41
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	88.04	88.04
CDY36138	Canola	cytosol	88.04	88.04
EER88530	Sorghum	cytosol	88.04	88.04
GSMUA_AchrUn_...	Banana	cytosol	87.85	87.85
CDY54836	Canola	cytosol	87.66	87.66
Bra010965.1-P	Field mustard	cytosol	87.48	87.48
EER97880	Sorghum	cytosol	87.48	87.48
CDX84951	Canola	cytosol	87.29	87.29
Bra032797.1-P	Field mustard	cytosol	87.29	87.29
AT1G24510.1	Thale cress	cytosol	87.29	87.29
CDY51593	Canola	cytosol	87.29	87.13
Bra012506.1-P	Field mustard	cytosol	87.1	87.1
CDY03881	Canola	cytosol	86.92	86.92
TraesCS1D01G216600.1	Wheat	cytosol	86.92	86.92
TraesCS1A01G213800.1	Wheat	cytosol	64.11	86.84
TraesCS1B01G227600.1	Wheat	cytosol	86.73	86.73
TraesCS7B01G269300.2	Wheat	cytosol	86.54	86.54
TraesCS7D01G364400.2	Wheat	cytosol	86.54	86.54
TraesCS7A01G358400.1	Wheat	cytosol, unclear	86.54	86.54
HORVU7Hr1G088080.1	Barley	cytosol	86.36	85.87
Zm00001d007960_P001	Maize	cytosol	87.1	85.04
Zm00001d018694_P002	Maize	cytosol	87.1	85.04
HORVU1Hr1G054530.14	Barley	cytosol	43.36	78.64
VIT_01s0137g00250.t01	Wine grape	cytosol	92.15	74.47
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	35.51	35.65
VIT_18s0001g00480.t01	Wine grape	cytosol	32.52	32.89
VIT_07s0130g00410.t01	Wine grape	cytosol	31.59	30.34
VIT_15s0021g02230.t01	Wine grape	cytosol	30.28	29.67
VIT_17s0000g08170.t01	Wine grape	cytosol	30.65	29.44
VIT_00s0670g00010.t01	Wine grape	cytosol	29.72	28.29
VIT_14s0006g03200.t01	Wine grape	cytosol	25.79	25.79
VIT_08s0007g07460.t01	Wine grape	cytosol	25.05	24.59
VIT_05s0094g00640.t01	Wine grape	cytosol	6.92	22.98

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100255682	wikigene:100255682	EntrezGene:100264594	wikigene:100264594	MapMan:20.3.1.5
Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:CCB47465	ProteinID:CCB47465.1	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	UniProt:F6H5B8	EMBL:FN595235	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150
GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100255682	wikigene:LOC100255682	EntrezGene:LOC100264594
wikigene:LOC100264594	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	TIGR:TC53565
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	UniParc:UPI000210A094	ArrayExpress:VIT_12s0028g00350	EnsemblPlantsGene:VIT_12s0028g00350	EnsemblPlants:VIT_12s0028g00350.t01
RefSeq:XP_002283538	RefSeq:XP_002283538.1	RefSeq:XP_002285352	RefSeq:XP_002285352.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:950162..968668

Molecular Weight (calculated)

59079.7 Da

IEP (calculated)

5.854

GRAVY (calculated)

-0.110

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILRGQEQ KSRLRGLDAQ KANISAGKAV ARILRTSLGP KGMDKILQSP DGDVTITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVLAG ALLEQAEGLL ERGIHPIRVA EGYEMACRIA VEHLEHIAQK FEFGVTNIEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVM AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IHGIVVDKDM SHPQMPKHIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLRLQEQKY FDDMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATVREGGVY TPCILRGHRF LAGLVREKSF GTTKDRMLYI ERCANSRAVT IFVRGGNKMI IEETKRSIHD
401: ALCVARNIIR NNSIVYGGGS AEISCSIAVE AAADKYPGVE QYAIRAFGDA LDSIPMALAE NSGLQPIETL SAVKSQQIKD NNAYCGIDCN DVGTYDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SPTDY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.