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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • golgi 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:golgi
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_18s0001g00480.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G24510.1 VIT_18s0001g00480.t01 AT5G20890.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g013990.2.1 Tomato nucleus 75.83 93.83
KRH31372 Soybean nucleus 75.83 93.83
KRG97508 Soybean cytosol, nucleus 75.68 93.64
GSMUA_Achr6P06770_001 Banana cytosol 67.82 92.96
VIT_12s0028g00350.t01 Wine grape cytosol 74.47 92.15
PGSC0003DMT400027968 Potato cytosol 30.36 91.78
Os06t0562600-01 Rice cytosol, extracellular, plasma membrane 73.87 91.4
GSMUA_AchrUn_... Banana cytosol 73.87 91.4
CDY36138 Canola cytosol 73.72 91.22
CDY54836 Canola cytosol 73.72 91.22
Bra010965.1-P Field mustard cytosol 73.56 91.03
EER88530 Sorghum cytosol 73.41 90.84
AT1G24510.1 Thale cress cytosol 73.41 90.84
EER97880 Sorghum cytosol 73.41 90.84
CDY51593 Canola cytosol 73.41 90.67
Bra012506.1-P Field mustard cytosol 73.26 90.65
CDY03881 Canola cytosol 73.11 90.47
Bra032797.1-P Field mustard cytosol 73.11 90.47
CDX84951 Canola cytosol 72.96 90.28
TraesCS7B01G269300.2 Wheat cytosol 72.36 89.53
TraesCS7D01G364400.2 Wheat cytosol 72.36 89.53
TraesCS7A01G358400.1 Wheat cytosol, unclear 72.36 89.53
HORVU7Hr1G088080.1 Barley cytosol 72.51 89.22
TraesCS1D01G216600.1 Wheat cytosol 72.05 89.16
TraesCS1A01G213800.1 Wheat cytosol 53.02 88.86
TraesCS1B01G227600.1 Wheat cytosol 71.6 88.6
Zm00001d018694_P002 Maize cytosol 73.11 88.32
Zm00001d007960_P001 Maize cytosol 72.96 88.14
HORVU1Hr1G054530.14 Barley cytosol 36.86 82.71
VIT_17s0000g03040.t01 Wine grape cytosol, plastid 30.06 37.34
VIT_18s0001g00480.t01 Wine grape cytosol 26.89 33.65
VIT_15s0021g02230.t01 Wine grape cytosol 25.53 30.95
VIT_07s0130g00410.t01 Wine grape cytosol 25.98 30.88
VIT_17s0000g08170.t01 Wine grape cytosol 25.23 29.98
VIT_00s0670g00010.t01 Wine grape cytosol 24.47 28.83
VIT_14s0006g03200.t01 Wine grape cytosol 21.9 27.1
VIT_08s0007g07460.t01 Wine grape cytosol 21.0 25.5
VIT_05s0094g00640.t01 Wine grape cytosol 6.04 24.84
Protein Annotations
Gene3D:1.10.560.10MapMan:20.3.1.5Gene3D:3.50.7.10ProteinID:CCB44017ProteinID:CCB44017.1InterPro:Chap_CCT_epsi
InterPro:Chaperone_TCP-1InterPro:Chaperonin_TCP-1_CSInterPro:Cpn60/TCP-1UniProt:F6GVJ8EMBL:FN594954InterPro:GAG-pre-integrase_dom
GO:GO:0000123GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0005737GO:GO:0005829GO:GO:0005832GO:GO:0006139GO:GO:0006259GO:GO:0006457
GO:GO:0006458GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009987
GO:GO:0015074GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016573GO:GO:0019538
GO:GO:0044183GO:GO:0051082GO:GO:0061077InterPro:GROEL-like_equatorial_sfInterPro:GroEL-like_apical_dom_sfInterPro:IPR027409
InterPro:IPR027410InterPro:IPR027413PFAM:PF00118PFAM:PF13976PRINTS:PR00304ScanProsite:PS00750
ScanProsite:PS00751ScanProsite:PS00995PANTHER:PTHR11353PANTHER:PTHR11353:SF178InterPro:RNaseH-like_sfSUPFAM:SSF48592
SUPFAM:SSF52029SUPFAM:SSF53098SUPFAM:SSF54849InterPro:TCP-1-like_intermed_sfUniParc:UPI0002108355ArrayExpress:VIT_01s0137g00250
EnsemblPlantsGene:VIT_01s0137g00250EnsemblPlants:VIT_01s0137g00250.t01SEG:seg:::
Description
No Description!
Coordinates
chr1:-:6749168..6767317
Molecular Weight (calculated)
73471.7 Da
IEP (calculated)
6.460
GRAVY (calculated)
-0.208
Length
662 amino acids
Sequence
(BLAST)
001: MALAFDEFGR PFIILKEQEQ KSRLRGLDAQ KANISAGKAV ARILRTSLGP KGMDKMLQSP DGDVTITNDG ATILEQMDVD NQIAKLVVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERLL ERGIHPIRIS EGYEMASRIA VEHLEHIAQK FDFGVTNIEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVM SVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL IYGILVDKDM SHPQMPKQIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLRQQEQKY FDDMVQKCKD VGATLVICQW
301: GFDDEANHLL LHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTQEKLG KDRSTGKTIG IGRESQGLYH LTSDSSPAVC ISTDAPLLIH NRLGHPSLSK
401: FQKMVPRFST LSLLPCESCQ LGKHTRVSFP KRLNNRAKSP FELVHTDVWG PCRTASILGF QYFVTFIDDY SRCTCHWDAG LVREKSFGTT KDRMLYIEHC
501: ANSRAVTIFI RGGNKMMIEE TKRSIHDALC VARNLIRSNS IVYGGGSAEI SCSIAVEAAA DRYPGVEQYA IRAFGDALDS IPMALAENSG LQPIETLSAV
601: KSQQIKEDNP YCGIDCNDVG TNDMQEQNVF ETLIGKQQQI LLATQVVKMI LKIDDVISPS EY
Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)
001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY
Arabidopsis Description
CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.