Factsheet for Zm00001d018694_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008369_P001
Zm00001d040257_P001
Zm00001d040688_P001
Zm00001d052882_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	Zm00001d008369_P001	AT5G20890.1	21798944
AT1G24510.1	Zm00001d040257_P001	AT5G20890.1	21798944
AT1G24510.1	Zm00001d040688_P001	AT5G20890.1	21798944
AT1G24510.1	Zm00001d052882_P001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97880	Sorghum	cytosol	96.53	98.88
Zm00001d007960_P001	Maize	cytosol	98.36	98.36
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	93.25	95.51
PGSC0003DMT400073555	Potato	cytosol	44.53	93.49
Solyc05g013990.2.1	Tomato	nucleus	89.78	91.96
GSMUA_Achr6P06770_001	Banana	cytosol	80.84	91.72
TraesCS7B01G269300.2	Wheat	cytosol	89.23	91.4
TraesCS7A01G358400.1	Wheat	cytosol, unclear	89.23	91.4
HORVU7Hr1G088080.1	Barley	cytosol	89.42	91.08
TraesCS7D01G364400.2	Wheat	cytosol	88.87	91.03
KRH31372	Soybean	nucleus	88.5	90.65
TraesCS1A01G213800.1	Wheat	cytosol	65.33	90.63
KRG97508	Soybean	cytosol, nucleus	88.32	90.47
TraesCS1D01G216600.1	Wheat	cytosol	88.14	90.28
GSMUA_AchrUn_...	Banana	cytosol	87.96	90.09
TraesCS1B01G227600.1	Wheat	cytosol	87.59	89.72
PGSC0003DMT400027968	Potato	cytosol	35.77	89.5
CDY36138	Canola	cytosol	86.68	88.78
Bra032797.1-P	Field mustard	cytosol	86.68	88.78
CDY51593	Canola	cytosol	86.68	88.62
CDY03881	Canola	cytosol	86.5	88.6
Bra012506.1-P	Field mustard	cytosol	86.5	88.6
CDX84951	Canola	cytosol	86.5	88.6
CDY54836	Canola	cytosol	86.5	88.6
Bra010965.1-P	Field mustard	cytosol	86.31	88.41
AT1G24510.1	Thale cress	cytosol	86.13	88.22
VIT_12s0028g00350.t01	Wine grape	cytosol	85.04	87.1
HORVU1Hr1G054530.14	Barley	cytosol	44.53	82.71
VIT_01s0137g00250.t01	Wine grape	cytosol	88.32	73.11
Zm00001d051742_P001	Maize	plastid	35.77	36.64
Zm00001d027371_P001	Maize	plasma membrane	35.22	36.07
Zm00001d008369_P001	Maize	cytosol, nucleus	32.85	34.29
Zm00001d040257_P001	Maize	cytosol	32.85	34.29
Zm00001d052056_P005	Maize	plasma membrane	31.39	31.56
Zm00001d018349_P001	Maize	cytosol	30.84	31.01
Zm00001d028183_P002	Maize	cytosol	31.02	30.47
Zm00001d053857_P002	Maize	cytosol	29.2	28.57
Zm00001d007192_P001	Maize	cytosol	26.64	27.09
Zm00001d053553_P002	Maize	cytosol	30.84	25.92
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	24.09	24.09
Zm00001d007508_P005	Maize	cytosol	24.45	23.39
Zm00001d040688_P001	Maize	cytosol	11.86	23.13
Zm00001d052882_P001	Maize	plastid	16.61	17.95

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100272988	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1D6HRM1
InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONM51132.1	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	UniParc:UPI0008455DD0
EnsemblPlantsGene:Zm00001d018694	EnsemblPlants:Zm00001d018694_P002	EnsemblPlants:Zm00001d018694_T002	SEG:seg	:	:

Description

T-complex protein 1 subunit epsilon

Coordinates

chr7:-:2689700..2695442

Molecular Weight (calculated)

60467.3 Da

IEP (calculated)

5.349

GRAVY (calculated)

-0.164

Length

548 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILREQEK KTRLRGLDAQ KANIGAGKAV ARILRTSLGP KGADKMLQSP DGDVIITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAEKLL ERGIHPIRVA EGYEMASKVA FDHLERISEK FEFSADNIEP LVQTCMTTLS SKIVNRCKRA LAEIAVKAVL AVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL VYGIIVDKDM SHPQMPKRIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLREQEQKY FDEMVQKCKV NTELLLVLQN
301: INDAGATLVI CQWGFDDEAN HLLMHRNLPA VRWVGGVELE LIAIATGGRI VPRFQELSPE KLGKAGLVRE KSFGTTKDRM LYIEQCANSR AVTIFIRGGN
401: KMMIEETKRS LHDALCVARN LIRNNSIVYG GGSAEISCSI AVETAADRHP GVEQYAIRSF ADALDAVPLA LAENSGLSPI DTLTAVKAQQ VKESNPHCGI
501: DCNDVGTNDM KEQNVFETLI GKQQQILLAT QVVKMILKID DVISPSEY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.