Factsheet for Zm00001d040688_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71043	Canola	cytosol	71.89	64.13
Zm00001d040257_P001	Maize	cytosol	81.85	43.81
Zm00001d008369_P001	Maize	cytosol, nucleus	81.14	43.43
Bra020134.1-P	Field mustard	cytosol	72.95	40.43
GSMUA_Achr2P01800_001	Banana	cytosol	75.09	40.04
VIT_18s0001g00480.t01	Wine grape	cytosol	74.73	39.7
AT5G20890.1	Thale cress	cytosol	74.38	39.66
KRH25193	Soybean	nucleus	74.02	39.47
Solyc11g069000.1.1	Tomato	extracellular	73.67	39.35
Bra002337.1-P	Field mustard	cytosol	73.67	39.28
KRH30467	Soybean	nucleus	73.67	39.28
CDY16573	Canola	cytosol	73.67	39.28
CDX92428	Canola	cytosol	73.67	39.28
CDX70950	Canola	cytosol	73.67	39.28
CDY09085	Canola	cytosol	72.95	38.9
GSMUA_Achr3P24440_001	Banana	peroxisome	68.33	34.91
Bra006584.1-P	Field mustard	cytosol	73.31	27.54
CDX88835	Canola	mitochondrion	73.67	27.24
Zm00001d052882_P001	Maize	plastid	35.59	19.72
Zm00001d053857_P002	Maize	cytosol	28.83	14.46
Zm00001d052056_P005	Maize	plasma membrane	27.05	13.95
Zm00001d018349_P001	Maize	cytosol	26.69	13.76
Zm00001d051742_P001	Maize	plastid	24.56	12.9
Zm00001d007192_P001	Maize	cytosol	23.84	12.43
Zm00001d027371_P001	Maize	plasma membrane	23.13	12.15
Zm00001d007960_P001	Maize	cytosol	23.13	11.86
Zm00001d018694_P002	Maize	cytosol	23.13	11.86
Zm00001d028183_P002	Maize	cytosol	22.06	11.11
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	18.86	9.67
Zm00001d053553_P002	Maize	cytosol	21.71	9.36
Zm00001d007508_P005	Maize	cytosol	18.51	9.08
PGSC0003DMT400019727	Potato	cytosol	3.56	7.19
CDY72106	Canola	cytosol	1.42	1.89
CDY72126	Canola	cytosol	1.42	1.89

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.50.7.10	MapMan:35.1	UniProt:A0A1D6MS71	InterPro:Chap_CCT_beta	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONM31805.1	PFAM:PF00118	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI000844F8CD	EnsemblPlantsGene:Zm00001d040688
EnsemblPlants:Zm00001d040688_P001	EnsemblPlants:Zm00001d040688_T001	:	:	:	:

Description

T-complex protein 1 subunit beta

Coordinates

chr3:+:58087494..58088371

Molecular Weight (calculated)

31589.1 Da

IEP (calculated)

4.840

GRAVY (calculated)

-0.076

Length

281 amino acids

Sequence
(BLAST)

001: MDIDLRFMSK VADIEDAEKQ KMRDKVQKII AHGINYFVNR QLIYNFPEEL FADAGILAIE HADFEGIERL ALITGGEIAS TFDNPESVKL GHCKVIEEIM
101: IGEDMLIHFT GIEVGQACTI VLRGTSEHVL DEVERSLHDT LCVLSETVND TRVLFRGGWP EMTPRKKSHD IDAFSHALQA IPTTIADIVG FDRAELISQL
201: QAEHHKENCT ARIDVITGNV GDMQKLGIQE SFKEKQAILL FATEAAKMIL KVGEIITCAP CRREDKMSAV CLYCDWRRVD V

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.