Factsheet for Zm00001d052056_P005

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05938	Sorghum	cytosol	98.53	98.53
Zm00001d018349_P001	Maize	cytosol	97.8	97.8
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	97.25	97.25
HORVU1Hr1G052730.26	Barley	cytosol	67.34	94.59
TraesCS1D01G208500.1	Wheat	cytosol	84.95	92.97
TraesCS1A01G205200.1	Wheat	cytosol	92.66	92.66
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	91.56	91.56
TraesCS1B01G218800.1	Wheat	cytosol	79.08	91.31
TraesCS7A01G217200.1	Wheat	cytosol	90.83	90.83
TraesCS7A01G062100.1	Wheat	cytosol	90.83	90.83
TraesCS7D01G056800.1	Wheat	cytosol	90.83	90.83
TraesCS4A01G427500.1	Wheat	cytosol, unclear	90.46	90.46
VIT_15s0021g02230.t01	Wine grape	cytosol	89.72	89.56
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	88.62	88.62
KRH59103	Soybean	nucleus	88.62	88.62
TraesCS7D01G218500.2	Wheat	cytosol	91.19	87.04
AT3G20050.1	Thale cress	cytosol	86.42	86.42
CDY25374	Canola	cytosol	86.24	86.24
CDY42227	Canola	cytosol	86.06	86.06
CDY24564	Canola	cytosol	86.06	86.06
Solyc01g090750.2.1	Tomato	nucleus	85.69	85.69
PGSC0003DMT400066954	Potato	cytosol	85.32	85.32
CDX82264	Canola	cytosol	84.77	84.77
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	42.57	84.67
Bra001773.1-P	Field mustard	cytosol	84.77	84.62
CDY36063	Canola	cytosol	84.59	84.59
Bra035820.1-P	Field mustard	cytosol	86.06	84.35
CDY33444	Canola	cytosol	85.87	83.13
HORVU7Hr1G044070.2	Barley	cytosol	86.06	82.14
Bra038252.1-P	Field mustard	cytosol	86.06	61.63
Zm00001d040257_P001	Maize	cytosol	34.5	35.81
Zm00001d008369_P001	Maize	cytosol, nucleus	34.31	35.62
Zm00001d053857_P002	Maize	cytosol	34.86	33.93
Zm00001d027371_P001	Maize	plasma membrane	31.19	31.78
Zm00001d051742_P001	Maize	plastid	31.01	31.59
Zm00001d018694_P002	Maize	cytosol	31.56	31.39
Zm00001d007960_P001	Maize	cytosol	31.38	31.2
Zm00001d028183_P002	Maize	cytosol	29.17	28.49
Zm00001d040688_P001	Maize	cytosol	13.95	27.05
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	27.16	27.01
Zm00001d007192_P001	Maize	cytosol	26.42	26.72
Zm00001d007508_P005	Maize	cytosol	27.16	25.83
Zm00001d053553_P002	Maize	cytosol	29.17	24.39
Zm00001d052882_P001	Maize	plastid	17.61	18.93

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100283716	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:AQK55914.1
UniProt:B6TKY3	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EMBL:EU965648
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340
UniParc:UPI000182E1AE	EnsemblPlantsGene:Zm00001d052056	EnsemblPlants:Zm00001d052056_P005	EnsemblPlants:Zm00001d052056_T005	SEG:seg	:

Description

T-complex protein 1 subunit alpha

Coordinates

chr4:-:177955978..177961410

Molecular Weight (calculated)

59198.6 Da

IEP (calculated)

5.933

GRAVY (calculated)

-0.083

Length

545 amino acids

Sequence
(BLAST)

001: MAITAPTPDI LGERQSGQDV RTQNVMACGA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKRGNDL VKNKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVDKLGKES LINSAKTSMS SKLINSDSDF FATLVVEAVQ AVKTTNAKGD VKYPIKSINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPT RVTPARIACL DFNLQKTKMQ LGVQVLVTDP RELEKIRQRE SDITKERIEK ILKAGANVVL TTKGIDDMSL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATM VSTFADMEGE ETFDSSFLGH ADEVVEERIA DDDVILVKGT KNTSAVSIIL RGANDYMLDE IERSLHDALC
401: IVKRTLESNM VVAGGGAVEA ALSVYLENLA TTLGSREQLA IAEFAESLLI IPKVLSVNAA KDATELVAKL RAYHHTAQTK ADKQHYSSMG LDLSKGIIRN
501: NLEYGVIEPS MSKVKIIQFA TEAAITILRI DDMIKLTKEE EGNEE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.