CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	99.45	99.45
VIT_15s0021g02230.t01	Wine grape	cytosol	94.13	93.96
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	90.46	90.46
GSMUA_Achr11P...	Banana	cytosol	91.19	90.04
AT3G20050.1	Thale cress	cytosol	89.72	89.72
CDY42227	Canola	cytosol	89.54	89.54
CDY25374	Canola	cytosol	89.36	89.36
CDY24564	Canola	cytosol	88.99	88.99
EES05938	Sorghum	cytosol	88.99	88.99
Zm00001d052056_P005	Maize	plasma membrane	88.62	88.62
Zm00001d018349_P001	Maize	cytosol	88.62	88.62
Solyc01g090750.2.1	Tomato	nucleus	88.62	88.62
CDX82264	Canola	cytosol	88.26	88.26
CDY36063	Canola	cytosol	88.26	88.26
PGSC0003DMT400066954	Potato	cytosol	88.26	88.26
Bra001773.1-P	Field mustard	cytosol	88.26	88.1
Bra035820.1-P	Field mustard	cytosol	89.17	87.41
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	87.16	87.16
CDY33444	Canola	cytosol	89.72	86.86
TraesCS7A01G217200.1	Wheat	cytosol	86.79	86.79
TraesCS7D01G056800.1	Wheat	cytosol	86.42	86.42
TraesCS7A01G062100.1	Wheat	cytosol	86.42	86.42
TraesCS4A01G427500.1	Wheat	cytosol, unclear	86.06	86.06
TraesCS1A01G205200.1	Wheat	cytosol	85.87	85.87
TraesCS1B01G218800.1	Wheat	cytosol	74.13	85.59
TraesCS1D01G208500.1	Wheat	cytosol	78.17	85.54
HORVU1Hr1G052730.26	Barley	cytosol	60.0	84.28
TraesCS7D01G218500.2	Wheat	cytosol	86.79	82.84
GSMUA_Achr2P01090_001	Banana	cytosol	53.95	81.44
HORVU7Hr1G044070.2	Barley	cytosol	81.83	78.11
Bra038252.1-P	Field mustard	cytosol	89.54	64.13
KRH33254	Soybean	cytosol	6.79	46.84
KRH62761	Soybean	mitochondrion	10.46	41.91
KRH57568	Soybean	cytosol	7.71	38.18
KRH76087	Soybean	cytosol, endoplasmic reticulum	10.64	36.94
KRH30467	Soybean	nucleus	34.68	35.86
KRH25193	Soybean	nucleus	34.5	35.67
KRH73433	Soybean	endoplasmic reticulum, nucleus	35.78	34.82
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	35.78	34.82
KRH60476	Soybean	endoplasmic reticulum	32.29	33.02
KRH41771	Soybean	endoplasmic reticulum, nucleus	32.11	32.83
KRH49364	Soybean	endoplasmic reticulum, nucleus	30.28	32.29
KRH31372	Soybean	nucleus	31.19	31.78
KRG97508	Soybean	cytosol, nucleus	31.19	31.78
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	28.99	28.52
KRH38791	Soybean	cytosol	28.99	28.52
KRG92501	Soybean	cytosol	28.81	28.19
KRH70153	Soybean	nucleus	27.89	27.89
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	27.71	27.71
KRH46911	Soybean	endoplasmic reticulum	26.42	26.92
KRH01781	Soybean	nucleus	26.05	26.54
KRH62778	Soybean	cytosol, endoplasmic reticulum	13.95	21.65

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100805255	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02003299
InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_05G165500	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	UniProt:I1K467	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH59103
ProteinID:KRH59103	ProteinID:KRH59103.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI0002339B38	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:35606887..35614439

Molecular Weight (calculated)

59067.8 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.021

Length

545 amino acids

Sequence
(BLAST)

001: MAVVAQTPDI AGERQSGQDV RTQNVVACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVEKLGKDS LINCAKTSMS SKLIAGDSDF FAVLVVDAVQ AVKMTNARGE VKYPIKGINI
201: LKAHGKSARD SFLMNGYALN TGRAAQGMPL RVAPARIACL DFNLQKTKMQ LGVQVLVTDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VSTFADMEGE ETFEPSFLGY ADEVVEERIS DDAVVMIKGT KTTSAVTLIL RGANDHMLDE MDRALHDALS
401: IVKRTLESNT VVAGGGAVEA ALSVYLEYLA TTLGSREQLA IAEFAESLLI IPKVLSVNAA KDATELVAKL RAYHHSAQTK ADKKHLSSMG LDLSQGKIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQNED

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.