CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62761	Soybean	mitochondrion	80.25	92.65
KRH57568	Soybean	cytosol	46.5	66.36
CDY43747	Canola	cytosol	46.5	57.03
CDY11302	Canola	cytosol	46.5	57.03
KRH33254	Soybean	cytosol	21.02	41.77
CDY47913	Canola	cytosol	63.06	37.93
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	70.7	19.82
KRH73433	Soybean	endoplasmic reticulum, nucleus	68.79	19.29
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	36.94	10.64
KRH59103	Soybean	nucleus	36.94	10.64
KRH30467	Soybean	nucleus	35.03	10.44
KRH25193	Soybean	nucleus	35.03	10.44
KRH38791	Soybean	cytosol	31.85	9.03
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	31.85	9.03
KRH31372	Soybean	nucleus	30.57	8.97
KRG97508	Soybean	cytosol, nucleus	30.57	8.97
KRH41771	Soybean	endoplasmic reticulum, nucleus	29.94	8.82
KRH49364	Soybean	endoplasmic reticulum, nucleus	28.66	8.81
KRH60476	Soybean	endoplasmic reticulum	29.3	8.63
KRG92501	Soybean	cytosol	30.57	8.62
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	25.48	7.34
KRH70153	Soybean	nucleus	24.84	7.16
KRH01781	Soybean	nucleus	23.57	6.92
KRH46911	Soybean	endoplasmic reticulum	23.57	6.92
KRH62778	Soybean	cytosol, endoplasmic reticulum	1.27	0.57

Protein Annotations

Gene3D:1.10.560.10	MapMan:35.1	UniProt:A0A0R0LA89	EMBL:ACUP02000560	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_01G130400	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:IPR027413	EnsemblPlants:KRH76087
ProteinID:KRH76087	ProteinID:KRH76087.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	UniParc:UPI0006EDB643	:	:

Description

hypothetical protein

Coordinates

chr1:-:44552647..44553455

Molecular Weight (calculated)

17392.9 Da

IEP (calculated)

5.982

GRAVY (calculated)

0.013

Length

157 amino acids

Sequence
(BLAST)

001: MIHSYYNWIL SESQKTATSR PTFEVQNLNP SCLSLFLLHL QPWQGKPQLV SNINACTAVA DVVRTTLDPR GMDKLIHDDK GTVTISNDGA TIMKLLDIVH
101: PAAKILADIA KSQDSEVGDG TTNVVLLAAE FLREAKPFIE DGVHSQNFIK LIFYIIN

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.