Factsheet for Zm00001d053553_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92655	Sorghum	cytosol	84.97	99.28
Zm00001d028183_P002	Maize	cytosol	84.05	98.21
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	82.52	96.42
TraesCS7A01G346200.1	Wheat	cytosol	78.83	92.11
HORVU7Hr1G080310.1	Barley	cytosol	78.83	92.11
TraesCS7B01G237000.1	Wheat	cytosol	78.99	91.15
TraesCS7D01G332900.1	Wheat	cytosol	78.83	90.97
GSMUA_Achr6P23290_001	Banana	cytosol	76.23	89.23
VIT_17s0000g08170.t01	Wine grape	cytosol	75.46	88.33
VIT_07s0130g00410.t01	Wine grape	cytosol	75.15	87.97
Bra001174.1-P	Field mustard	cytosol	74.08	87.03
PGSC0003DMT400060294	Potato	cytosol	74.08	87.03
CDX74120	Canola	cytosol	74.08	87.03
GSMUA_Achr5P09040_001	Banana	cytosol	74.23	86.89
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	73.62	86.64
KRH38791	Soybean	cytosol	73.62	86.64
Solyc05g056310.2.1	Tomato	extracellular, plastid	73.93	86.53
CDY18835	Canola	cytosol	73.47	86.31
AT5G26360.1	Thale cress	cytosol	73.47	86.31
Bra040242.1-P	Field mustard	cytosol	73.31	86.13
KRG92501	Soybean	cytosol	73.01	85.46
CDY49990	Canola	cytosol	73.93	85.16
Zm00001d007960_P001	Maize	cytosol	26.07	31.02
Zm00001d018694_P002	Maize	cytosol	25.92	30.84
Zm00001d027371_P001	Maize	plasma membrane	24.39	29.72
Zm00001d053857_P002	Maize	cytosol	25.31	29.46
Zm00001d052056_P005	Maize	plasma membrane	24.39	29.17
Zm00001d051742_P001	Maize	plastid	23.93	29.16
Zm00001d018349_P001	Maize	cytosol	24.23	28.99
Zm00001d008369_P001	Maize	cytosol, nucleus	23.31	28.95
Zm00001d040257_P001	Maize	cytosol	23.16	28.76
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	22.85	27.19
Zm00001d007192_P001	Maize	cytosol	21.78	26.35
Zm00001d007508_P005	Maize	cytosol	22.7	25.83
Zm00001d040688_P001	Maize	cytosol	9.36	21.71
Zm00001d052882_P001	Maize	plastid	11.2	14.4

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:103654781	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1D6QQ13
ProteinID:AQK59623.1	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI000843236B
EnsemblPlantsGene:Zm00001d053553	EnsemblPlants:Zm00001d053553_P002	EnsemblPlants:Zm00001d053553_T002	SEG:seg	:	:

Description

T-complex protein 1 subunit gamma

Coordinates

chr4:-:233807693..233818462

Molecular Weight (calculated)

71096.5 Da

IEP (calculated)

8.953

GRAVY (calculated)

-0.238

Length

652 amino acids

Sequence
(BLAST)

001: MALHAPVHVM KDSLKRESGA KVHQANIQAA KAVADIIRTT LGPRSMLKML LDAGGGIVVT NDGNSILREI DIAHPAAKSM IELSRTQDEE VGDGTTSVIV
101: LAGEMLHVAQ AFIDKNYHPT VICRAYTKAL DDAIAVLDKI AMPVDVNDRG AMLGLVKSSI GTKFTGQFGD LIADLAIDAT TTAGVDLGQG MREVDIKKYI
201: KVEKVPGGQL EDSRVLKGVM INKDVVAPGK MRRKIVNPRI ILLDCPVEYK KGENQTNAEL MKEEDWQVLL EMEEEYIKNL CAQILKFKPD LVITEKGLSD
301: LAIHYLSKAG VTAIRRLRKT DNNRIAKACG AVIVNRPEEL QESDVGTGAG LFEVKKIGDE FFAFIVDCKD PKACTVLLRG ASKDVLNEVE RNLQDAMSVA
401: RNILKNPKLL PGGGATELTV SATLKQKSSS VEGVEKLTSF ILTRTEDKLE CWDCKVIPGK CAVSQHKLVL VAKIARTKVG ADRGEGKKSS RKGPSKRPLG
501: RKKMIQTTCG RRWQSAFGRS QGTYKGTSLD WPYEAAALAF EAIPRTLAQN CGLNVIRIMT QLQGKHANGE NAWVGIDGRS GDIVDMKERK IWDSYSVKAQ
601: TFKTAIEAAC MLLRIDDIVS GIKKKQAPGA SAPKQPQIET EGDADNEQMI PE

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.