Factsheet for Bra040242.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18835	Canola	cytosol	99.64	99.64
Bra001174.1-P	Field mustard	cytosol	98.74	98.74
AT5G26360.1	Thale cress	cytosol	95.68	95.68
VIT_07s0130g00410.t01	Wine grape	cytosol	92.79	92.46
GSMUA_Achr6P23290_001	Banana	cytosol	89.73	89.41
VIT_17s0000g08170.t01	Wine grape	cytosol	89.37	89.05
PGSC0003DMT400060294	Potato	cytosol	88.47	88.47
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	88.11	88.27
KRH38791	Soybean	cytosol	87.75	87.91
Solyc05g056310.2.1	Tomato	extracellular, plastid	88.11	87.79
GSMUA_Achr5P09040_001	Banana	cytosol	87.93	87.61
KRG92501	Soybean	cytosol	86.85	86.53
EER92655	Sorghum	cytosol	86.85	86.38
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	86.67	86.2
Zm00001d028183_P002	Maize	cytosol	86.49	86.02
Os02t0247200-01	Rice	cytosol	85.77	85.15
TraesCS7A01G346200.1	Wheat	cytosol	85.59	85.13
HORVU7Hr1G080310.1	Barley	cytosol	85.23	84.77
TraesCS7B01G237000.1	Wheat	cytosol	85.41	83.89
TraesCS7D01G332900.1	Wheat	cytosol	85.05	83.54
Zm00001d053553_P002	Maize	cytosol	86.13	73.31
Bra010965.1-P	Field mustard	cytosol	30.27	31.4
Bra012506.1-P	Field mustard	cytosol	30.09	31.21
Bra038682.1-P	Field mustard	cytosol	31.17	31.17
Bra034807.1-P	Field mustard	cytosol	29.73	31.07
Bra032797.1-P	Field mustard	cytosol	29.91	31.03
Bra001423.1-P	Field mustard	cytosol	30.99	30.71
Bra021300.1-P	Field mustard	cytosol	29.19	30.51
Bra022292.1-P	Field mustard	cytosol, plastid	28.83	30.02
Bra020134.1-P	Field mustard	cytosol	27.03	29.59
Bra002337.1-P	Field mustard	cytosol	27.57	29.03
Bra001773.1-P	Field mustard	cytosol	28.47	28.94
Bra035820.1-P	Field mustard	cytosol	28.47	28.42
Bra036422.1-P	Field mustard	cytosol	26.49	27.02
Bra001094.1-P	Field mustard	cytosol	26.67	27.01
Bra035423.1-P	Field mustard	cytosol	10.81	26.79
Bra031959.1-P	Field mustard	cytosol	25.77	26.29
Bra008652.1-P	Field mustard	cytosol	23.96	24.81
Bra040591.1-P	Field mustard	cytosol	23.78	24.67
Bra006338.1-P	Field mustard	cytosol	19.28	23.57
Bra038252.1-P	Field mustard	cytosol	29.19	21.29
Bra006584.1-P	Field mustard	cytosol	27.39	20.32

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra040242	EnsemblPlants:Bra040242.1
EnsemblPlants:Bra040242.1-P	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4FGL4
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344
UniParc:UPI0002544CE8	:	:	:	:	:

Description

AT5G26360 (E=6e-310) | chaperonin, putative

Coordinates

chrA01:-:28279746..28282896

Molecular Weight (calculated)

60272.0 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.113

Length

555 amino acids

Sequence
(BLAST)

001: MNAPVLVLKD SLKRESGTKV HHGNIQASKV VADVIRTTLG PRSMLKMLLD AGGGIIVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF IEKSYHPTVI CRAYIKALED AIAVLDKIAM SIDVNDRETV LGLVKSCIGT KFTSQFGDLI ADLAIDATTI VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQLED SKVLRGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDVGTGAGLF EVKKIGDDFF AFVVDCKEPK ACTVLLRGPS KDLLNEVERN LQDAMSVSRN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDAYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGAGPSKPT IETEGDADNE QILPD

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.