Factsheet for Zm00001d051742_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008369_P001
Zm00001d040257_P001
Zm00001d040688_P001
Zm00001d052882_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Zm00001d008369_P001	AT5G20890.1	21798944
AT3G18190.1	Zm00001d040257_P001	AT5G20890.1	21798944
AT3G18190.1	Zm00001d040688_P001	AT5G20890.1	21798944
AT3G18190.1	Zm00001d052882_P001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95631	Sorghum	cytosol	98.32	98.32
Zm00001d027371_P001	Maize	plasma membrane	97.2	97.2
Os02t0332200-01	Rice	plasma membrane	93.64	93.82
HORVU7Hr1G034140.1	Barley	plasma membrane	93.08	93.26
TraesCS7D01G164400.1	Wheat	cytosol	92.34	92.51
TraesCS7B01G068100.1	Wheat	golgi, unclear	92.34	92.51
TraesCS7A01G426400.1	Wheat	unclear	92.34	92.51
Os10t0514600-01	Rice	plasma membrane	87.85	86.88
TraesCS6B01G391500.1	Wheat	mitochondrion	82.43	84.48
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	80.75	81.05
KRH60476	Soybean	endoplasmic reticulum	79.44	79.74
KRH41771	Soybean	endoplasmic reticulum, nucleus	79.25	79.55
Bra021300.1-P	Field mustard	cytosol	77.94	78.53
PGSC0003DMT400014441	Potato	plastid	79.07	78.48
CDY18509	Canola	cytosol	77.76	78.34
CDY24438	Canola	cytosol, plastid	77.94	78.24
CDX92212	Canola	cytosol, plastid	77.94	78.24
Solyc03g118910.1.1	Tomato	plastid	78.69	78.11
CDX95541	Canola	cytosol, plastid	77.94	78.09
AT3G18190.1	Thale cress	cytosol, plastid	77.76	77.61
Bra022292.1-P	Field mustard	cytosol, plastid	77.2	77.49
GSMUA_Achr6P09540_001	Banana	cytosol	53.08	77.38
KRH49364	Soybean	endoplasmic reticulum, nucleus	73.27	76.71
Zm00001d007960_P001	Maize	cytosol	37.2	36.31
Zm00001d018694_P002	Maize	cytosol	36.64	35.77
Zm00001d008369_P001	Maize	cytosol, nucleus	32.34	32.95
Zm00001d040257_P001	Maize	cytosol	32.34	32.95
Zm00001d052056_P005	Maize	plasma membrane	31.59	31.01
Zm00001d053857_P002	Maize	cytosol	32.34	30.89
Zm00001d018349_P001	Maize	cytosol	30.65	30.09
Zm00001d028183_P002	Maize	cytosol	28.97	27.78
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	26.73	26.09
Zm00001d007192_P001	Maize	cytosol	25.98	25.79
Zm00001d007508_P005	Maize	cytosol	26.92	25.13
Zm00001d040688_P001	Maize	cytosol	12.9	24.56
Zm00001d053553_P002	Maize	cytosol	29.16	23.93
Zm00001d052882_P001	Maize	plastid	17.2	18.15

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100191456	MapMan:20.3.1.4	Gene3D:3.50.7.10	ProteinID:AQK55055.1	UniProt:B4F8V9
EMBL:BT033547	EMBL:BT042946	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI00017B60C8
EnsemblPlantsGene:Zm00001d051742	EnsemblPlants:Zm00001d051742_P001	EnsemblPlants:Zm00001d051742_T001	SEG:seg	:	:

Description

T-complex protein 1 subunit delta

Coordinates

chr4:-:168615582..168622676

Molecular Weight (calculated)

57649.2 Da

IEP (calculated)

7.226

GRAVY (calculated)

0.084

Length

535 amino acids

Sequence
(BLAST)

001: MAAAAAAAAP SRKTETYTDT KRRDDVRGAN IAAARAVADA VRTSLGPRGM DKMICSGDQA QEVIITNDGA TILSRMALLQ PAARMLAELS RSQDAAAGDG
101: TTTVVVLAGS LLRRAQSLLS AGAHPTAAAD ALHRLATRAV EILHGMAIPI ELSDRESLVK SASTALNSKV VSQYSTLLSP LAVDAALSVV DPAHPDLLDL
201: RDIRIIKKLG GTVDDTELVT GLIFDKKASH AAGGPTRVEN AKIAVIQFQI SPPKTDIEQS VIVSDYAQMD RILREERNYI LGMVKKIKAA GCNVLLIQKS
301: ILRDAVTDLS LHYLAKAKIL VVKDVERDEM EFITKTLNCL PIANIEHFRT DKLGYADVVE EISVGEGKVV KITGIRDMGR TATVVVRGSN QLVIDEAERS
401: LHDALCVIRC LVNKRFLIAG GGAPEIEMSM QLAAWAKELR GMESYCIKEF ADALEVIPYT LAENAGLNPI SIVTELRNRH ARGEKNAGIN VRKGQITNIL
501: EENVVQPLLV STSAITLACE CVRMILKIDD IVTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.