Factsheet for TraesCS7B01G068100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G595300.1
TraesCS4A01G054800.1
TraesCS4B01G250200.1
TraesCS4D01G250100.1
TraesCS5A01G342600.1
TraesCS5B01G341900.1
TraesCS5D01G347400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	TraesCS3B01G595300.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS4A01G054800.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS4B01G250200.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS4D01G250100.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS5A01G342600.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS5B01G341900.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS5D01G347400.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G164400.1	Wheat	cytosol	99.25	99.25
TraesCS7A01G426400.1	Wheat	unclear	99.25	99.25
HORVU7Hr1G034140.1	Barley	plasma membrane	99.06	99.06
EER95631	Sorghum	cytosol	92.7	92.52
Zm00001d051742_P001	Maize	plastid	92.51	92.34
Os02t0332200-01	Rice	plasma membrane	91.57	91.57
Zm00001d027371_P001	Maize	plasma membrane	91.39	91.22
TraesCS6B01G391500.1	Wheat	mitochondrion	87.83	89.85
Os10t0514600-01	Rice	plasma membrane	86.14	85.03
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	79.96	80.11
KRH60476	Soybean	endoplasmic reticulum	79.4	79.55
PGSC0003DMT400014441	Potato	plastid	79.96	79.22
Solyc03g118910.1.1	Tomato	plastid	79.59	78.85
KRH41771	Soybean	endoplasmic reticulum, nucleus	78.65	78.8
Bra021300.1-P	Field mustard	cytosol	78.28	78.72
CDX95541	Canola	cytosol, plastid	78.65	78.65
CDX92212	Canola	cytosol, plastid	78.46	78.61
CDY24438	Canola	cytosol, plastid	78.46	78.61
CDY18509	Canola	cytosol	78.09	78.53
AT3G18190.1	Thale cress	cytosol, plastid	78.46	78.17
Bra022292.1-P	Field mustard	cytosol, plastid	77.72	77.86
KRH49364	Soybean	endoplasmic reticulum, nucleus	73.03	76.32
GSMUA_Achr6P09540_001	Banana	cytosol	51.69	75.2
TraesCS7B01G269300.2	Wheat	cytosol	36.7	36.64
TraesCS1B01G227600.1	Wheat	cytosol	36.14	36.07
TraesCS3B01G595300.1	Wheat	cytosol	8.8	34.81
TraesCS4B01G250200.1	Wheat	cytosol	31.27	33.4
TraesCS5B01G341900.1	Wheat	cytosol	32.21	32.39
TraesCS1B01G218800.1	Wheat	cytosol	27.15	30.72
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	30.52	29.91
TraesCS6B01G159800.1	Wheat	cytosol	30.15	28.9
TraesCS7B01G237000.1	Wheat	cytosol	28.65	27.08
TraesCS4B01G165400.1	Wheat	cytosol	25.47	25.19
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	24.34	24.48

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	EnsemblPlantsGene:TraesCS7B01G068100	EnsemblPlants:TraesCS7B01G068100.1	TIGR:cd03338
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:73179403..73183352

Molecular Weight (calculated)

57453.9 Da

IEP (calculated)

6.996

GRAVY (calculated)

0.071

Length

534 amino acids

Sequence
(BLAST)

001: MAAPAVAAAP SARKGETYTD TKRRDDVRGA NIAAARAVAD AVRTSLGPRG MDKMISSGDQ EVIITNDGAT ILSRMSLLQP AARMLAELSR SQDAAAGDGT
101: TTVVVIAGAL LRRAQSLLAA GAHPTAAADS LHRLAARAVQ VLEGMAIPIE LTDRDSLVKS ASTALNSKVV SQYSGLLAPL AVDAALSVVD PAHPELLDLR
201: DIRIIKKLGG TVDDTELVRG LIFDKKASHA AGGPSRIENA KIAVIQFQIS PPKTDIEQSV IVSDYAQMDR ILREERNYIL GMVKKIKASG CNVLLIQKSI
301: LRDAVTELSL HYLSKAKILV VKDVERDEIE FITKTLNCLP IANIEHFRED KLGYADVVEE VSAGDGKIVK ITGIRDMGRT ATVLVRGSNQ LVIDEADRSI
401: HDALCVIRCL VNKRFLIAGG GAPEIEMSMQ LAAWSKELHG MESYCIKEFA DALEVIPYTL AENAGLNPIA IVTELRNRHA KGEKNTGINV RKGQITNILE
501: ENVVQPLLVS TSAISLACEC VRMILKIDDI VTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.