CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92157
EER97533
EER98969
EES09994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	EER92157	AT1G19180.1	21798944
AT3G11830.1	EER97533	AT1G19180.1	21798944
AT3G11830.1	EER98969	AT1G19180.1	21798944
AT3G11830.1	EES09994	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053857_P002	Maize	cytosol	98.57	98.57
Os06t0687700-01	Rice	plasma membrane	52.68	97.68
HORVU6Hr1G025270.1	Barley	cytosol	94.11	94.61
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	93.93	94.43
TraesCS6B01G159800.1	Wheat	cytosol	93.57	94.08
TraesCS6D01G121300.1	Wheat	cytosol	93.57	94.08
GSMUA_Achr2P21510_001	Banana	cytosol	85.36	93.18
AT3G11830.1	Thale cress	cytosol	91.79	92.28
VIT_00s0670g00010.t01	Wine grape	cytosol	91.96	91.64
CDY08491	Canola	cytosol	82.32	91.47
CDY01062	Canola	cytosol	82.32	91.47
Solyc06g065520.2.1	Tomato	nucleus, plastid	90.89	91.22
PGSC0003DMT400067201	Potato	cytosol	90.71	91.04
CDX73850	Canola	cytosol	83.21	90.84
Bra038682.1-P	Field mustard	cytosol	90.0	90.81
Bra034807.1-P	Field mustard	cytosol	85.89	90.58
CDY53919	Canola	cytosol	82.5	90.41
KRH73433	Soybean	endoplasmic reticulum, nucleus	90.0	90.0
Bra001423.1-P	Field mustard	cytosol	89.82	89.82
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	89.64	89.64
CDY67306	Canola	cytosol	53.39	88.46
GSMUA_Achr8P16590_001	Banana	plastid	92.86	85.81
EES00273	Sorghum	cytosol	33.39	36.67
EES00491	Sorghum	cytosol	33.75	36.0
EES05938	Sorghum	cytosol	33.93	34.86
EER95631	Sorghum	cytosol	30.18	31.59
EER97880	Sorghum	cytosol	29.29	30.65
EER88530	Sorghum	cytosol	29.11	30.47
EER92655	Sorghum	cytosol	30.18	30.29
EES09994	Sorghum	cytosol	24.82	25.36
EER97762	Sorghum	cytosol	24.11	25.23

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8076085	UniProt:C5XVC9
InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EES04545	ProteinID:EES04545
ProteinID:EES04545.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0046686
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	EnsemblPlantsGene:SORBI_3004G047200	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
unigene:Sbi.4115	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI0001A8554E	RefSeq:XP_002451569.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:3839237..3844566

Molecular Weight (calculated)

60217.4 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.114

Length

560 amino acids

Sequence
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GRAQVVSNIN ACTAVGDTVR TTLGPRGMDK LIHDDKGGVT ISNDGATIMR LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPYIEDGVH PHSLIRSYRT AGNMAIQRVK ELAVSIEGKS LEEKKTLLAK CAATTLSSKL IGGEKEFFAS MVVDAVLAIG NDDRLNLIGI
201: KKVPGGTMRD SFLVNGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPLQYQSIV DAEWNIIYDK LDKCVKSGAK IVLSRLAIGD
301: LATQYFADRD IFCAGRVTEE DLQRVAAATG GTVQTSVNNV IDEVLGSCEV FEEKQVGNER FNIFSGCPSG QTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RALKNSTVVP GGGAIDMEIS KYLRQHARTI AGKSQFFVNS FAKALEVIPR QLCDNAGFDA TDVLNKLRQK HASGEGANYG VDINTGGIAD SFANFVWEPA
501: VVKINAINAA TEASCLILSV DETVKNPKSE SAQGEAAAGA MAGRGGGAMR GRGGRGMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.