Factsheet for HORVU4Hr1G068820.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G054800.1	Wheat	cytosol, unclear	93.39	99.62
TraesCS4B01G250200.1	Wheat	cytosol	88.57	99.2
TraesCS4D01G250100.1	Wheat	cytosol	88.39	99.0
HORVU5Hr1G085530.1	Barley	mitochondrion	95.0	96.9
Os03t0619400-01	Rice	plasma membrane	88.39	94.29
EES00273	Sorghum	cytosol	85.71	94.12
EES00491	Sorghum	cytosol	88.21	94.1
Zm00001d040257_P001	Maize	cytosol	87.5	93.33
Zm00001d008369_P001	Maize	cytosol, nucleus	86.43	92.19
GSMUA_Achr2P01800_001	Banana	cytosol	83.21	88.42
Bra020134.1-P	Field mustard	cytosol	79.64	87.97
VIT_18s0001g00480.t01	Wine grape	cytosol	83.04	87.9
KRH25193	Soybean	nucleus	82.68	87.86
CDY71043	Canola	cytosol	49.11	87.3
KRH30467	Soybean	nucleus	82.14	87.29
AT5G20890.1	Thale cress	cytosol	81.96	87.1
CDY72106	Canola	cytosol	32.86	86.79
Bra002337.1-P	Field mustard	cytosol	81.61	86.72
CDX70950	Canola	cytosol	81.61	86.72
CDY09085	Canola	cytosol	81.61	86.72
CDY16573	Canola	cytosol	81.61	86.72
CDX92428	Canola	cytosol	81.43	86.53
Solyc11g069000.1.1	Tomato	extracellular	81.25	86.5
CDY72126	Canola	cytosol	32.68	86.32
GSMUA_Achr3P24440_001	Banana	peroxisome	79.29	80.73
Bra006584.1-P	Field mustard	cytosol	82.5	61.76
CDX88835	Canola	mitochondrion	82.5	60.79
PGSC0003DMT400019727	Potato	cytosol	14.82	59.71
HORVU7Hr1G088080.1	Barley	cytosol	32.86	34.2
HORVU6Hr1G025270.1	Barley	cytosol	33.75	33.93
HORVU7Hr1G034140.1	Barley	plasma membrane	31.25	32.77
HORVU7Hr1G044070.2	Barley	cytosol	32.5	31.87
HORVU1Hr1G052730.26	Barley	cytosol	21.25	30.67
HORVU1Hr1G054530.14	Barley	cytosol	14.11	26.78
HORVU6Hr1G091690.4	Barley	cytosol, plastid	26.96	26.49
HORVU7Hr1G080310.1	Barley	cytosol	26.07	26.16
HORVU4Hr1G040660.1	Barley	cytosol	23.93	24.81

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A287PIX1	InterPro:Chap_CCT_beta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
EnsemblPlantsGene:HORVU4Hr1G068820	EnsemblPlants:HORVU4Hr1G068820.1	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI000B480648
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:567348430..567352867

Molecular Weight (calculated)

60888.7 Da

IEP (calculated)

5.871

GRAVY (calculated)

-0.146

Length

560 amino acids

Sequence
(BLAST)

001: LLPASAPPPL QPPRRRDPPA PYLSPASAPS PVPEMERVLK DDAIQEKGER ARMVASFVGA MAIADLVKTT LGPKGMDKIL QSTGRGRSVT VTNDGATILK
101: SLHIDNPAAK VLVDISKVQD DEVGDGTTSV VVLAGELLRE AEKLVNMKIH PMTIIAGYRL AAECARNALL QRTMDNKDNT DKFRSDLMNI AMTTLSSKIL
201: SQDKEYFAEL AVDAVLRLKG STNLESIQIL KKPGGSLKDS FLDEGFILDK KIGLGQPKRI ENANILVANT AMDTDKVKIY GARVRVDSMA KVADIEAAEK
301: QKMREKVEKI IGHGINCFVN RQLIYNFPEE LFADAGILAV EHADFEGIER LALVTGGDIA STFDNPESVK LGHCKLIEEI MIGEDRLIHF SGVAMGQACT
401: IVLRGASEHV LDEAERSLHD ALCVLSQTVT DTRVIYGGGW PEMVMSKEVD ELARKTPGKK SHAIDAFSRA LQAIPTIIAD NAGLDSAELI SQLRAEHHKE
501: NSTAGIDVIS GGLGDMQKRG ICEAFKVKQA IVLSATEAAE MILRVDEIIT CAPRRREDRM

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.