Factsheet for HORVU5Hr1G085530.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G347400.1	Wheat	cytosol	95.45	99.24
TraesCS5A01G342600.1	Wheat	cytosol	95.45	99.24
TraesCS5B01G341900.1	Wheat	cytosol	95.81	99.06
HORVU4Hr1G068820.1	Barley	cytosol	96.9	95.0
EES00491	Sorghum	cytosol	90.53	94.67
EES00273	Sorghum	cytosol	87.8	94.51
Os03t0619400-01	Rice	plasma membrane	89.98	94.1
Zm00001d040257_P001	Maize	cytosol	89.8	93.9
Zm00001d008369_P001	Maize	cytosol, nucleus	88.52	92.57
GSMUA_Achr2P01800_001	Banana	cytosol	84.88	88.42
VIT_18s0001g00480.t01	Wine grape	cytosol	84.88	88.09
KRH25193	Soybean	nucleus	84.34	87.86
Bra020134.1-P	Field mustard	cytosol	81.06	87.77
KRH30467	Soybean	nucleus	83.97	87.48
CDY71043	Canola	cytosol	49.91	86.98
AT5G20890.1	Thale cress	cytosol	83.42	86.91
CDY72106	Canola	cytosol	33.52	86.79
Bra002337.1-P	Field mustard	cytosol	83.06	86.53
CDX70950	Canola	cytosol	83.06	86.53
CDY09085	Canola	cytosol	83.06	86.53
CDY16573	Canola	cytosol	83.06	86.53
Solyc11g069000.1.1	Tomato	extracellular	82.88	86.5
CDX92428	Canola	cytosol	82.88	86.34
CDY72126	Canola	cytosol	33.33	86.32
GSMUA_Achr3P24440_001	Banana	peroxisome	80.51	80.36
Bra006584.1-P	Field mustard	cytosol	83.97	61.63
CDX88835	Canola	mitochondrion	83.97	60.66
PGSC0003DMT400019727	Potato	cytosol	15.12	59.71
HORVU7Hr1G088080.1	Barley	cytosol	33.7	34.39
HORVU6Hr1G025270.1	Barley	cytosol	34.43	33.93
HORVU7Hr1G034140.1	Barley	plasma membrane	31.88	32.77
HORVU7Hr1G044070.2	Barley	cytosol	33.15	31.87
HORVU1Hr1G052730.26	Barley	cytosol	21.68	30.67
HORVU1Hr1G054530.14	Barley	cytosol	14.39	26.78
HORVU6Hr1G091690.4	Barley	cytosol, plastid	27.69	26.67
HORVU7Hr1G080310.1	Barley	cytosol	26.78	26.34
HORVU4Hr1G040660.1	Barley	cytosol	24.23	24.63

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A287S3C7	InterPro:Chap_CCT_beta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
EnsemblPlantsGene:HORVU5Hr1G085530	EnsemblPlants:HORVU5Hr1G085530.1	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI000B47BA06
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:575220613..575247330

Molecular Weight (calculated)

59752.4 Da

IEP (calculated)

6.022

GRAVY (calculated)

-0.115

Length

549 amino acids

Sequence
(BLAST)

001: SCVLFCATAP RRRSASAPAP APAEMERVLK DDAIQEKGER ARMASFVGAM AIADLVKTTL GPKGMDKILQ STGRGRSVTV TNDGATILKS LHIDNPAAKV
101: LVDISKVQDD EVGDGTTSVV VLAGELLREA EKLVNMKIHP MTIIAGYRMA AECARNALLQ KTMDNKDNTD KFRSDLMNIA MTTLSSKILS QDKEYFAELA
201: VDAVLRLKGS TNLESIQILK KPGGSLKDSF LDEGFILDKK IGLGQPKRIE NANILVANTA MDTDKVKIYG ARVRVDSMSK VADIEAAEKQ KMREKVEKII
301: GHGINCFVNR QLIYNFPEEL FADAGILAVE HADFEGIERL ALVTGGDIAS TFDNPESVKL GHCKLIEEIM IGEDRLIHFS GVAMGQACTI VLRGASEHVL
401: DEAERSLHDA LCVLSQTVND TRVIFGGGWP EMVMSKEVDE LARRTPGKKS HAIDAFSRAL QAIPTIIADN AGLDSAELIS QLRAEHHKEN STIGIDVISG
501: GLGDMQKRGI CEAFKVKQAI VLSATEAAEM ILRVDEIITC APRRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.