Factsheet for Os08t0137250-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0307800-01
Os03t0640100-01
Os06t0275500-01
Os08t0538700-01
Os11t0533500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	Os03t0307800-01	AT1G02580.1	10962025
AT3G20740.1	Os03t0307800-01	AT1G02580.1	11114524
AT3G20740.1	Os03t0307800-01	AT1G02580.1	11148284
AT3G20740.1	Os03t0307800-01	AT1G02580.1	12970192
AT3G20740.1	Os03t0307800-01	AT1G02580.1	15456723
AT3G20740.1	Os03t0307800-01	AT1G02580.1	15469499
AT3G20740.1	Os03t0307800-01	AT1G02580.1	18812497
AT3G20740.1	Os06t0275500-01	AT2G23380.1	14871310
AT3G20740.1	Os06t0275500-01	AT2G23380.1	15456723
AT3G20740.1	Os06t0275500-01	AT2G23380.1	18812497
AT3G20740.1	Os08t0538700-01	AT3G12280.1	15221456
AT3G20740.1	Os11t0533500-01	AT3G12280.1	15221456
AT3G20740.1	Os08t0538700-01	AT3G12280.1	18812497
AT3G20740.1	Os11t0533500-01	AT3G12280.1	18812497
AT3G20740.1	Os03t0307800-01	AT4G02020.1	15456723
AT3G20740.1	Os03t0640100-01	AT5G58230.1	12970192
AT3G20740.1	Os03t0640100-01	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024698_P002	Maize	cytosol	58.58	72.03
Os08t0137100-01	Rice	cytosol	57.51	71.28
TraesCS4A01G388400.1	Wheat	cytosol, plastid	55.36	68.25
GSMUA_Achr5P26370_001	Banana	cytosol	53.86	68.21
TraesCS7A01G089100.1	Wheat	cytosol	55.15	67.81
VIT_19s0014g05210.t01	Wine grape	plastid	51.93	65.41
PGSC0003DMT400049479	Potato	cytosol	50.64	63.44
Solyc07g064090.2.1	Tomato	nucleus	50.43	63.17
AT3G20740.1	Thale cress	cytosol	49.14	62.06
KRH31935	Soybean	cytosol	50.21	61.26
KRH71526	Soybean	cytosol	50.0	61.15
CDY53612	Canola	plastid	48.07	60.7
CDY27567	Canola	plastid	47.64	60.16
KRH22237	Soybean	cytosol	49.36	59.74
OQU79846	Sorghum	plastid	62.45	59.15
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	57.08	58.46
KRH27099	Soybean	cytosol, mitochondrion, nucleus	28.11	58.22
TraesCS7A01G308300.1	Wheat	nucleus, plastid	58.8	57.93
TraesCS7D01G084500.1	Wheat	plastid	56.44	57.8
EES13318	Sorghum	mitochondrion	54.94	57.02
Zm00001d049608_P001	Maize	mitochondrion	55.58	56.18
TraesCS7D01G305100.1	Wheat	nucleus, plastid	58.15	55.88
HORVU7Hr1G073410.1	Barley	cytosol	56.87	55.67
CDY06378	Canola	mitochondrion	30.9	53.53
CDY19611	Canola	plastid	43.13	52.89
CDY19607	Canola	cytosol, nucleus, plastid	44.64	52.79
CDY56255	Canola	cytosol	44.21	52.42
CDY68274	Canola	cytosol, nucleus	22.1	50.49
CDY19610	Canola	cytoskeleton, cytosol, nucleus	28.33	44.3
Bra041121.1-P	Field mustard	cytosol	5.36	35.21
CDY10986	Canola	extracellular	10.52	23.79

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	EntrezGene:9271694	EMBL:AK242200	ProteinID:BAD03075.1	ProteinID:BAT03753.1
ProteinID:EAZ41450.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677
GO:GO:0006139	GO:GO:0006325	GO:GO:0006342	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009908	GO:GO:0009960	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0019538	GO:GO:0030154	GO:GO:0031519	GO:GO:0035098	GO:GO:0040029	GO:GO:0048316
GO:GO:0070734	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os08g0137250	EnsemblPlants:Os08t0137250-01
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253
PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	UniProt:Q6ZJW8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000225FE4
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015649120.1
SEG:seg	:	:	:	:	:

Description

FERTILIZATION-INDEPENDENT ENDOSPERM 1Esc-like core component of the polycomb repressive complex 2, Seed size regulation under heat stress (Os08t0137250-01)

Coordinates

chr8:+:2095644..2100604

Molecular Weight (calculated)

51851.6 Da

IEP (calculated)

7.693

GRAVY (calculated)

-0.295

Length

466 amino acids

Sequence
(BLAST)

001: MGPTSRNHKS SQKDVAPNEA KPPRYPQRNR SITASASASA FASPAVANSR VAKERPSSST AGEGEPQETV LKLPSIPTLP ARMAKLVPLE GLGCEAAVGS
101: LTPSREREYK VTNKHTEGRR PVYAIVFNFL DVRYYDIFAT ACGPRLSTYR CLMNGKFALL QSYLDDDMNE SFFTVSWACD IDGNPLLVAA GSTGIIRVIN
201: CATEKIYKSL VGHGGSVNEI KSQPSNPSLI ISASKDESIK LWNVQTGILI LVFGGVGGHR HEVLGVDFHT SDIYRFLSCG MDNTVRIWSM KEFWEYVEKS
301: YSWTDATSKF PTKFVQFPVL CAEIHSNYVD CTKWLGDFVL SKSVENEILL WESITKEENP GEGHIDVLQK YPVPECNIWF MKFSCDFHHN QLAIGNRDGK
401: VYVWKVQTSP PVLIARLNNP QVKSAIRQTA VSFDGSTILA CTEDGNIWRW DEVDHPTAPV PSKKQK

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.