Factsheet for Os11t0533500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0203800-01	nucleus
Os03t0617500-01	nucleus
Os04t0112200-00	nucleus
Os05t0586300-00	nucleus
Os06t0236600-00	nucleus
Os08t0137100-01
Os08t0137250-01
Os09t0111100-01	nucleus, nucleus
Os09t0382300-00	nucleus
Os11t0586300-01
Os12t0588800-01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Os04t0112200-00	AT1G47870.1	20407024
AT3G12280.1	Os04t0112200-00	AT1G47870.1	20706207
AT3G12280.1	Os06t0236600-00	AT1G70210.1	20407024
AT3G12280.1	Os09t0382300-00	AT1G70210.1	20407024
AT3G12280.1	Os08t0137100-01	AT3G20740.1	15221456
AT3G12280.1	Os08t0137250-01	AT3G20740.1	15221456
AT3G12280.1	Os08t0137100-01	AT3G20740.1	18812497
AT3G12280.1	Os08t0137250-01	AT3G20740.1	18812497
AT3G12280.1	Os05t0586300-00	AT3G24140.1	24571519
AT3G12280.1	Os09t0111100-01	AT3G50070.1	20407024
AT3G12280.1	Os11t0586300-01	AT3G55760.1	20706207
AT3G12280.1	Os09t0111100-01	AT4G34160.1	20407024
AT3G12280.1	Os03t0203800-01	AT4G37630.1	20407024
AT3G12280.1	Os03t0617500-01	AT4G37630.1	20407024
AT3G12280.1	Os12t0588800-01	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	79.45	79.2
TraesCS4A01G143200.1	Wheat	plastid	79.14	78.9
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	78.32	78.16
TraesCS4B01G162200.1	Wheat	nucleus	78.12	77.88
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	67.38	75.49
OQU83580	Sorghum	plastid	65.54	73.85
KXG21076	Sorghum	plastid	65.75	73.4
KXG26019	Sorghum	cytosol	19.94	72.49
Zm00001d052666_P014	Maize	nucleus	67.59	71.69
GSMUA_Achr6P08220_001	Banana	nucleus	52.05	50.85
Os08t0538700-01	Rice	nucleus	52.35	50.69
VIT_04s0008g02780.t01	Wine grape	nucleus	51.64	50.2
KRH13310	Soybean	nucleus	51.53	50.15
KRH63701	Soybean	nucleus	51.53	49.7
KRH20664	Soybean	nucleus	51.43	49.61
VIT_14s0068g00840.t01	Wine grape	cytosol	29.14	48.47
Solyc09g091280.2.1	Tomato	cytosol	50.0	48.04
PGSC0003DMT400030280	Potato	nucleus	49.8	47.93
AT3G12280.1	Thale cress	nucleus	49.59	47.88
CDY52614	Canola	cytosol	48.77	47.32
CDY08440	Canola	nucleus	48.98	47.15
CDY50559	Canola	nucleus	48.88	47.09
CDX73827	Canola	nucleus	48.67	47.08
Bra034764.1-P	Field mustard	nucleus	48.88	47.05
Bra038707.1-P	Field mustard	nucleus	48.88	46.91
CDY42141	Canola	cytosol	48.67	46.8
Bra001446.1-P	Field mustard	nucleus	48.67	46.35
CDY00765	Canola	mitochondrion	48.36	42.38
CDY52391	Canola	nucleus	7.26	30.74

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	EntrezGene:4350648	ProteinID:ABA94065.2	ProteinID:ABA94066.2
EMBL:AK064987	EMBL:AY941775	ProteinID:BAF28383.1	ProteinID:BAT14296.1	InterPro:Cyclin-like_sf	ProteinID:EEE52218.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:Os11g0533500	EnsemblPlants:Os11t0533500-01	PFAM:PF01857	PFAM:PF01858
PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	UniProt:Q2R374	InterPro:RBR
InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM01367
SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI000068212A	RefSeq:XP_015617546.1	SEG:seg	:

Description

retinoblastoma protein homolog 1, etinoblastoma-related 1, retinoblastoma-related protein-2Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-01);Similar to Retinoblastoma-related protein 2b (Fragment). (Os11t0533500-02)

Coordinates

chr11:+:19433456..19439870

Molecular Weight (calculated)

107870.0 Da

IEP (calculated)

8.218

GRAVY (calculated)

-0.198

Length

978 amino acids

Sequence
(BLAST)

001: MASQPPAAVE ARLADLCKEL GVDEGVAGEA AAVLEEGKGA LLASPSFGSK SPEDAEKLCF AFVLYCVSKL KETKAGSSGV RLWEILKGCK LKYDDFFKES
101: QRLASRIDQV LGSRYGSDWE ARLELKQLEN LVNLLADASR FYCKAFNELF LSPSTDQEPG STTNIPDYIR FGWLLFLILR SKSPELFKDL VSCIHGLVAI
201: LAILLIHVPA KFRSFTIEGS SHLIKQTEKG VDLLPSLCHN YHTSEDRLKE MMGKSYKVIE VFFSRKAINA SEFKTVNLDK IDTDGLMYFK DLVDDEIFQS
301: NLEKLEKLSS TTGCQGELDL EMFLTSNDYV LNAENSSGSS ANFGCSKRVF ETLASPTKTI KNMLAAPSSP SSPANGGSIK IVQMTPVTSA MTTAKWLRDV
401: ISSLPDKPSS KLEEFLSSCD TDLTSDVVKR VSIILEAIFP TKSIDRGTSI GLNCANAFDI PWAEARKMEA SKLYYRVLEA ICRAESQNNN VNNLTPLLSN
501: ERFHRCLIAC SAELVLATHK TVIMMFPAVL ESTGLTAFDL SKIIENFVRH EETLPRELKR HLNSLEEQLL ESMSWEKGSS LYNSLVVARP SLSTEINSLG
601: LLAEPMPSLD GIVARQSIHP DGLPPTPSKR WPSAGPDGNC YPQSPKRLCT ESRNSLVERN SQTPPPKQSQ TGLSILKAKY HPLQATFASP TVSNPVSGNE
701: KCAVVGVQIF FSKILKLAAI RIRNLCERLR HEELTVSVYN IFKQILDQQT ALFFNRHVDQ IILCCLYGVA KVSQLSLTFK EIVNNYKREP QCKPEVFRSI
801: FVGSTNRNGG FGSRHVDIIV FYNQVFVPTV KPLLVALMPS STRPEDKRNT NSQIPGSPKS SPFSNLPDMS PKKVSSSHNV YVSPLRQTKM DALLSPSSRS
901: FYACIGESTQ AFQSPSKDLA AINSRLNYPT RRINTRINFD MVSDSVVAGS LGQPNGGSAS SDPAAAFSPL SKKSKTDS

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.