Factsheet for Bra038707.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001929.1-P	nucleus
Bra007901.1-P	nucleus
Bra011501.1-P	nucleus
Bra012909.1-P	nucleus
Bra014096.1-P	nucleus
Bra017629.1-P	nucleus
Bra017840.1-P	nucleus
Bra023783.1-P
Bra023933.1-P
Bra028351.1-P	nucleus
Bra028357.1-P	nucleus
Bra029992.1-P	nucleus
Bra034612.1-P	nucleus
Bra040062.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Bra014096.1-P	AT1G47870.1	20407024
AT3G12280.1	Bra014096.1-P	AT1G47870.1	20706207
AT3G12280.1	Bra007901.1-P	AT1G70210.1	20407024
AT3G12280.1	Bra040062.1-P	AT3G08880.1	21798944
AT3G12280.1	Bra023933.1-P	AT3G20740.1	15221456
AT3G12280.1	Bra023933.1-P	AT3G20740.1	18812497
AT3G12280.1	Bra001929.1-P	AT3G24140.1	24571519
AT3G12280.1	Bra028351.1-P	AT3G24140.1	24571519
AT3G12280.1	Bra028357.1-P	AT3G24140.1	24571519
AT3G12280.1	Bra012909.1-P	AT3G50070.1	20407024
AT3G12280.1	Bra029992.1-P	AT3G50070.1	20407024
AT3G12280.1	Bra023783.1-P	AT3G55760.1	20706207
AT3G12280.1	Bra011501.1-P	AT4G34160.1	20407024
AT3G12280.1	Bra017629.1-P	AT4G34160.1	20407024
AT3G12280.1	Bra034612.1-P	AT4G34160.1	20407024
AT3G12280.1	Bra017840.1-P	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50559	Canola	nucleus	98.53	98.92
Bra034764.1-P	Field mustard	nucleus	91.46	91.73
AT3G12280.1	Thale cress	nucleus	86.95	87.46
Bra001446.1-P	Field mustard	nucleus	83.32	82.67
VIT_04s0008g02780.t01	Wine grape	nucleus	68.5	69.38
KRH13310	Soybean	nucleus	68.3	69.25
KRH20664	Soybean	nucleus	68.11	68.44
KRH63701	Soybean	nucleus	67.52	67.85
PGSC0003DMT400030280	Potato	nucleus	66.24	66.44
Solyc09g091280.2.1	Tomato	cytosol	66.05	66.11
GSMUA_Achr8P00470_001	Banana	nucleus	59.96	60.8
Os08t0538700-01	Rice	nucleus	58.78	59.31
EES14166	Sorghum	nucleus	57.51	57.91
Zm00001d052695_P016	Maize	nucleus	56.62	57.3
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	56.72	56.5
TraesCS7A01G264800.1	Wheat	nucleus	55.64	55.53
TraesCS7B01G162700.4	Wheat	nucleus, plastid	55.45	55.34
TraesCS7D01G265600.3	Wheat	nucleus	55.64	55.1
GSMUA_Achr6P08220_001	Banana	nucleus	53.48	54.45
HORVU7Hr1G055440.9	Barley	plastid	55.35	53.01
TraesCS4A01G143200.1	Wheat	plastid	47.2	49.03
Os11t0533500-01	Rice	nucleus	46.91	48.88
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	46.61	48.42
TraesCS4B01G162200.1	Wheat	nucleus	46.61	48.42
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	46.52	48.37
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	41.31	48.22
OQU83580	Sorghum	plastid	40.63	47.7
KXG21076	Sorghum	plastid	40.73	47.37
Zm00001d052666_P014	Maize	nucleus	41.31	45.66
KXG26019	Sorghum	cytosol	11.38	43.12

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	EnsemblPlantsGene:Bra038707	EnsemblPlants:Bra038707.1	EnsemblPlants:Bra038707.1-P	ncoils:Coil
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	UniProt:M4FC91	PFAM:PF01857	PFAM:PF01858
PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B
InterPro:RB_N	InterPro:RB_fam	SMART:SM00385	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954
UniParc:UPI000254524B	SEG:seg	:	:	:	:

Description

AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding

Coordinates

chrA01:+:26476910..26481481

Molecular Weight (calculated)

112843.0 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.223

Length

1019 amino acids

Sequence
(BLAST)

0001: MEEVQPPVTP PIDPNGKRSE ATLLDLCEKV LSLEGSVCDE ALKLFTETKR ILSANMANIG SGTREEVERF WFAFILYSVK MLTVRKQVDG QSVSGDNGFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGPVL CELYGADWEN RLQAKELQAN FVHLSLLSKY YKRGYREFFL TYDANAEKTS ANSASYLPDS YRFGWLLLLA
0201: LRNHAFSRFK DLVTCTNGLV SVLAILIVHV PCRFRNFSIQ DSSRFVKKGD KEVDLVASLC KIYDASEDEL RKIMNKANSL IETILKKKPS AASACKTDTL
0301: DNINTDGLTY FEDLLDESSI STSLTTLEKD YDETVCNKGE LDERVFINEE DSLLGSGSLS AGAVNLTGAK RKIDSLSSPA RTFISPLSPH KSPAAKTTVT
0401: ATPVSTAMTT AKWLRTVICP LPPKPSPGLE LFLKSCDRDI TNDVTRRAHV ILEAIFPNSS LGDQCAGGSL QPVNLMDDIW AQQRRLEAVK LYYRVLEAMC
0501: KAEAQILHVN NLNSLLTNER FHRCMLACSA ELVLATHKSI TMLFPAVLER TGITAFDLSK VIESFIRHED SLPRELRRHL NSLEERLLES MVWERGSSMY
0601: NSLIVAKAPL ALEINRLGLL AEPMPSLDAI AALINFSEGS SNHASSVQKA EACPGQNGDI KSPKRLCTDY RSILVERSSF ASPVKERLLA LGNVKSKTLP
0701: PPLQSAFATP TRPNPGGGGE TCAETGINIF FTKINKLAAV RINGMVERLQ LSQQIRESVY CLFQRVLAQR TSLLFNRHID QIILCCFYGV AKISQMSLTF
0801: REIIYNYRKQ PQCKPLVFRS VFVDSSQGRR QGRVGPDHVD IITFYNDVFI PAVKPLLVGI VPVKKGQAVE ANNNPEGHCP GSPKVSVFPS VPDMSPKKVS
0901: AVHNVYVSPL RGSKMDALIS HSSKSYYACV GESTHAYQSP SKDLSAINNR LNNNNSSNRK RTLKFDVEAG LVSDSMVGNS LYQQNQNQNQ NETDASNQNQ
1001: NGSDASSSGG APFKTEPQD

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.