Factsheet for Zm00001d052695_P016

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003439_P001	nucleus
Zm00001d004512_P001	nucleus
Zm00001d005293_P001	nucleus, nucleus
Zm00001d009715_P001	nucleus
Zm00001d013728_P001	nucleus
Zm00001d019696_P001	nucleus, nucleus
Zm00001d020353_P001	nucleus
Zm00001d024698_P002
Zm00001d028092_P001	nucleus
Zm00001d030894_P002	nucleus
Zm00001d033330_P001	nucleus
Zm00001d041345_P001	nucleus
Zm00001d048143_P003	nucleus
Zm00001d049608_P001
Zm00001d052977_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20407024
AT3G12280.1	Zm00001d004512_P001	AT1G47870.1	20706207
AT3G12280.1	Zm00001d020353_P001	AT1G70210.1	20407024
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	15221456
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	15221456
AT3G12280.1	Zm00001d024698_P002	AT3G20740.1	18812497
AT3G12280.1	Zm00001d049608_P001	AT3G20740.1	18812497
AT3G12280.1	Zm00001d009715_P001	AT3G24140.1	24571519
AT3G12280.1	Zm00001d005293_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT3G50070.1	20407024
AT3G12280.1	Zm00001d052977_P001	AT3G55760.1	20706207
AT3G12280.1	Zm00001d005293_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d019696_P001	AT4G34160.1	20407024
AT3G12280.1	Zm00001d003439_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d013728_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d028092_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d030894_P002	AT4G37630.1	20407024
AT3G12280.1	Zm00001d033330_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d041345_P001	AT4G37630.1	20407024
AT3G12280.1	Zm00001d048143_P003	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14166	Sorghum	nucleus	92.25	91.8
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	90.57	89.15
Os08t0538700-01	Rice	nucleus	82.82	82.57
TraesCS7B01G162700.4	Wheat	nucleus, plastid	78.35	77.28
TraesCS7A01G264800.1	Wheat	nucleus	78.25	77.18
TraesCS7D01G265600.3	Wheat	nucleus	77.95	76.29
HORVU7Hr1G055440.9	Barley	plastid	78.45	74.25
GSMUA_Achr8P00470_001	Banana	nucleus	68.02	68.16
VIT_04s0008g02780.t01	Wine grape	nucleus	61.27	61.33
KRH13310	Soybean	nucleus	60.28	60.4
KRH20664	Soybean	nucleus	60.28	59.86
KRH63701	Soybean	nucleus	59.98	59.57
PGSC0003DMT400030280	Potato	nucleus	59.98	59.45
Solyc09g091280.2.1	Tomato	cytosol	59.68	59.04
AT3G12280.1	Thale cress	nucleus	58.69	58.34
CDY52614	Canola	cytosol	57.99	57.94
CDY08440	Canola	nucleus	58.09	57.58
Bra034764.1-P	Field mustard	nucleus	57.99	57.48
CDY42141	Canola	cytosol	57.99	57.42
CDX73827	Canola	nucleus	57.4	57.17
CDY50559	Canola	nucleus	57.3	56.85
Bra038707.1-P	Field mustard	nucleus	57.3	56.62
Bra001446.1-P	Field mustard	nucleus	56.7	55.6
VIT_14s0068g00840.t01	Wine grape	cytosol	30.39	52.04
CDY00765	Canola	mitochondrion	57.4	51.79
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	43.69	50.4
Zm00001d052666_P014	Maize	nucleus	43.5	47.51
CDY52391	Canola	nucleus	10.13	44.16

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	EntrezGene:100217179	MapMan:13.1.2.1	UniProt:A0A1D6QIV5	ProteinID:AQK57742.1
ProteinID:AQK57752.1	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	PFAM:PF01857
PFAM:PF01858	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A
InterPro:RB_B	InterPro:RB_N	InterPro:RB_fam	SMART:SM00385	SMART:SM01367	SMART:SM01368
SUPFAM:SSF47954	UniParc:UPI0008449427	EnsemblPlantsGene:Zm00001d052695	EnsemblPlants:Zm00001d052695_P016	EnsemblPlants:Zm00001d052695_T016	SEG:seg

Description

Retinoblastoma-related protein 1

Coordinates

chr4:-:197650522..197658806

Molecular Weight (calculated)

111804.0 Da

IEP (calculated)

8.923

GRAVY (calculated)

-0.244

Length

1007 amino acids

Sequence
(BLAST)

0001: MDGVAKPSTS SGSGVTDSAS AAAASIDERF ADLCESKLGL DDSMTRQAMQ LFNETKNIKS SMSSLGGGSP EEVERFWSAC VMYCVSRLSK ARRSKESGSV
0101: SLCQILRASK LNIVDFFKEM PQFCIKVAHI LTGLYGSDWE KRLELKELQA NVVHLSLLSR HYKRAYQELF LPNDGKCSDS SSESNNQEVS DYYRFGWLLF
0201: LVLRIQTFSR FKDLVTSTNE LVSVLAVLII HIPVRLRNFD IKDSSYFGKK SDRGVSLIAS LCEKYHTSED ELSKALEKTN TLILDILKKK PWTATSACQQ
0301: DNLTFIDPEG LTVFKDLLQG GSLKSSLLIL EKEYENAINT RGELDERMFA NDEDSLLGSG SLSGGAINLP GTKRKYDVMA SPAKSISSPN PMSPPRFCLS
0401: PKGNSFCNSK MAPITPVSTA MTTAKWLRST VSPLPSKPSG ELLRFFSACD KDVTDDIVHR AGIILGAIFT SSSFGEQICT NMRSANRMDA IWTEQRKMEA
0501: LKLYYRVLES MCRAESQILS GNNLTLLLSN ERFHRCMIAC SAELVLATHK TVTLMFPAVL EKTGITAFDL SKVIEGFVRH EDTLPRELKR HLNSLEERLL
0601: ESMSWEKGSS MYNSLIVARP VLSIEINRLG LLAEPMPSLD AIAAHHNISM GGLPPLPFQK QERLQDKDEI RSPKRACTER RHVPVDSNSF RSQVKDSIKL
0701: KLPPPLQSAF ASPTRPNPAA GGETCAETGI AVFFSKISKL AAIRIRSLCE RLQLSQQVLE RVYSLVQQIL SQQTGLFFNR HIDQIILCSI YGVAKISQLQ
0801: LSFKEIVFGY RKQPQCKPQV FRSVYVHWPP TSHNGKTGED HVDIITFYNE VFIPAVKPLL VEVGPGASPK RKEEGKGSVY VGPYPESPRL ARFPNLPDMS
0901: PKKVSATHNV YVSPLRSSKM DTLLSPSPKS YYACVGESTY AFQSPSKDLK AINNRLNSWK KVSGRLNFDI VSDLVVASSL NGVQNAKPAA TEVVPTKTPV
1001: KCEPSES

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.