Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08440 | Canola | nucleus | 90.13 | 89.86 |
| Bra034764.1-P | Field mustard | nucleus | 90.03 | 89.76 |
| CDY42141 | Canola | cytosol | 89.34 | 88.99 |
| CDY50559 | Canola | nucleus | 87.86 | 87.68 |
| CDY52614 | Canola | cytosol | 86.57 | 87.0 |
| Bra038707.1-P | Field mustard | nucleus | 87.46 | 86.95 |
| CDX73827 | Canola | nucleus | 83.12 | 83.28 |
| Bra001446.1-P | Field mustard | nucleus | 83.71 | 82.57 |
| CDY00765 | Canola | mitochondrion | 84.21 | 76.43 |
| KRH13310 | Soybean | nucleus | 69.79 | 70.35 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 69.2 | 69.68 |
| KRH20664 | Soybean | nucleus | 69.5 | 69.43 |
| KRH63701 | Soybean | nucleus | 68.81 | 68.74 |
| PGSC0003DMT400030280 | Potato | nucleus | 67.82 | 67.62 |
| Solyc09g091280.2.1 | Tomato | cytosol | 67.32 | 66.99 |
| CDY52391 | Canola | nucleus | 14.51 | 63.64 |
| GSMUA_Achr8P00470_001 | Banana | nucleus | 61.4 | 61.89 |
| Os08t0538700-01 | Rice | nucleus | 60.41 | 60.59 |
| EES14166 | Sorghum | nucleus | 59.23 | 59.29 |
| Zm00001d052695_P016 | Maize | nucleus | 58.34 | 58.69 |
| Zm00001d031678_P003 | Maize | cytosol, nucleus, plastid | 58.64 | 58.06 |
| TraesCS7A01G264800.1 | Wheat | nucleus | 57.65 | 57.2 |
| TraesCS7B01G162700.4 | Wheat | nucleus, plastid | 57.45 | 57.0 |
| TraesCS7D01G265600.3 | Wheat | nucleus | 57.65 | 56.75 |
| HORVU7Hr1G055440.9 | Barley | plastid | 57.45 | 54.7 |
| GSMUA_Achr6P08220_001 | Banana | nucleus | 53.8 | 54.45 |
| Os11t0533500-01 | Rice | nucleus | 47.88 | 49.59 |
| TraesCS4A01G143200.1 | Wheat | plastid | 47.38 | 48.93 |
| Zm00001d007407_P006 | Maize | cytosol, nucleus, plastid | 42.05 | 48.8 |
| HORVU4Hr1G039890.2 | Barley | cytosol, nucleus, plastid | 46.99 | 48.57 |
| TraesCS4B01G162200.1 | Wheat | nucleus | 46.99 | 48.52 |
| TraesCS4D01G159600.1 | Wheat | cytosol, nucleus, plastid | 46.99 | 48.52 |
| OQU83580 | Sorghum | plastid | 40.97 | 47.81 |
| KXG21076 | Sorghum | plastid | 41.07 | 47.49 |
| Zm00001d052666_P014 | Maize | nucleus | 41.76 | 45.88 |
| KXG26019 | Sorghum | cytosol | 11.25 | 42.38 |
Protein Annotations
| Gene3D:1.10.472.10 | Gene3D:1.10.472.140 | MapMan:13.1.2.1 | EntrezGene:820408 | UniProt:A0A178VFS5 | ProteinID:AAG51072.1 |
| ProteinID:AEE75179.1 | EMBL:AF245395 | ArrayExpress:AT3G12280 | EnsemblPlantsGene:AT3G12280 | RefSeq:AT3G12280 | TAIR:AT3G12280 |
| RefSeq:AT3G12280-TAIR-G | EnsemblPlants:AT3G12280.1 | TAIR:AT3G12280.1 | EMBL:AY056293 | EMBL:AY150438 | Unigene:At.14958 |
| ProteinID:BAB03137.1 | InterPro:Cyclin-like_sf | GO:GO:0000003 | GO:GO:0000082 | GO:GO:0001558 | GO:GO:0001708 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006349 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007049 |
| GO:GO:0007129 | GO:GO:0007275 | GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 |
| GO:GO:0009058 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009567 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010090 | GO:GO:0010377 | GO:GO:0016032 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0022619 | GO:GO:0030154 | GO:GO:0032875 | GO:GO:0040007 | GO:GO:0040029 | GO:GO:0048229 |
| GO:GO:0048366 | GO:GO:0051726 | GO:GO:0051783 | GO:GO:1903866 | GO:GO:2000036 | GO:GO:2000653 |
| RefSeq:NP_566417.3 | ProteinID:OAP04371.1 | PFAM:PF01857 | PFAM:PF01858 | PFAM:PF08934 | PFAM:PF11934 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0000423 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR13742 | PANTHER:PTHR13742:SF22 | UniProt:Q9LKZ3 | InterPro:RBR | Symbol:RBR1 | InterPro:RB_A |
| InterPro:RB_B | InterPro:RB_C | InterPro:RB_N | InterPro:RB_fam | SMART:SM01367 | SMART:SM01368 |
| SUPFAM:SSF47954 | UniParc:UPI00000AC6EB | SEG:seg | : | : | : |
Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
Coordinates
chr3:-:3913349..3919359
Molecular Weight (calculated)
112181.0 Da
IEP (calculated)
7.964
GRAVY (calculated)
-0.196
Length
1013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.