Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G290800.1 | nucleus |
| TraesCS1B01G300100.1 | nucleus |
| TraesCS1D01G289400.1 | nucleus |
| TraesCS2A01G031800.1 | nucleus |
| TraesCS2B01G043500.1 | nucleus |
| TraesCS2D01G031400.1 | nucleus |
| TraesCS4A01G046900.1 | nucleus |
| TraesCS4A01G149300.1 | |
| TraesCS4A01G234600.1 | nucleus |
| TraesCS4A01G388400.1 | |
| TraesCS4B01G080500.1 | nucleus |
| TraesCS4B01G158500.1 | |
| TraesCS4B01G257900.1 | nucleus |
| TraesCS4D01G079400.1 | nucleus |
| TraesCS4D01G257800.1 | nucleus |
| TraesCS5A01G068600.1 | nucleus |
| TraesCS5A01G161000.1 | nucleus, nucleus |
| TraesCS5A01G200500.2 | nucleus |
| TraesCS5B01G075000.1 | nucleus |
| TraesCS5B01G158400.1 | nucleus, nucleus |
| TraesCS5B01G199100.1 | nucleus |
| TraesCS5D01G080600.1 | nucleus |
| TraesCS5D01G165900.1 | nucleus, nucleus |
| TraesCS5D01G206200.1 | nucleus |
| TraesCS7A01G089100.1 | |
| TraesCS7A01G089200.1 | |
| TraesCS7A01G308300.1 | |
| TraesCS7A01G479000.1 | nucleus |
| TraesCS7D01G084500.1 | |
| TraesCS7D01G305100.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G264800.1 | Wheat | nucleus | 99.31 | 99.31 |
| TraesCS7D01G265600.3 | Wheat | nucleus | 99.41 | 98.64 |
| HORVU7Hr1G055440.9 | Barley | plastid | 95.79 | 91.92 |
| Os08t0538700-01 | Rice | nucleus | 82.27 | 83.17 |
| EES14166 | Sorghum | nucleus | 79.82 | 80.53 |
| Zm00001d031678_P003 | Maize | cytosol, nucleus, plastid | 78.65 | 78.49 |
| Zm00001d052695_P016 | Maize | nucleus | 77.28 | 78.35 |
| GSMUA_Achr8P00470_001 | Banana | nucleus | 65.82 | 66.87 |
| KRH13310 | Soybean | nucleus | 59.35 | 60.3 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 59.35 | 60.24 |
| KRH20664 | Soybean | nucleus | 59.45 | 59.86 |
| KRH63701 | Soybean | nucleus | 59.26 | 59.66 |
| PGSC0003DMT400030280 | Potato | nucleus | 59.06 | 59.35 |
| Solyc09g091280.2.1 | Tomato | cytosol | 58.86 | 59.04 |
| AT3G12280.1 | Thale cress | nucleus | 57.0 | 57.45 |
| CDY08440 | Canola | nucleus | 56.02 | 56.3 |
| CDY52614 | Canola | cytosol | 55.53 | 56.25 |
| Bra034764.1-P | Field mustard | nucleus | 55.93 | 56.2 |
| CDY42141 | Canola | cytosol | 55.83 | 56.05 |
| CDY50559 | Canola | nucleus | 55.24 | 55.57 |
| Bra038707.1-P | Field mustard | nucleus | 55.34 | 55.45 |
| CDX73827 | Canola | nucleus | 54.06 | 54.6 |
| VIT_14s0068g00840.t01 | Wine grape | cytosol | 30.75 | 53.4 |
| Bra001446.1-P | Field mustard | nucleus | 53.67 | 53.36 |
| CDY00765 | Canola | mitochondrion | 54.36 | 49.73 |
| TraesCS4B01G162200.1 | Wheat | nucleus | 47.21 | 49.13 |
| CDY52391 | Canola | nucleus | 9.4 | 41.56 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.2.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006357 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0051726 | PFAM:PF01857 |
| PFAM:PF01858 | PFAM:PF08934 | PFAM:PF11934 | PANTHER:PTHR13742 | PANTHER:PTHR13742:SF22 | InterPro:RBR |
| InterPro:RB_A | InterPro:RB_B | InterPro:RB_C | InterPro:RB_N | InterPro:RB_fam | SMART:SM01367 |
| SMART:SM01368 | SUPFAM:SSF47954 | EnsemblPlantsGene:TraesCS7B01G162700 | EnsemblPlants:TraesCS7B01G162700.4 | TIGR:cd00043 | SEG:seg |
Description
No Description!
Coordinates
chr7B:-:223353144..223358654
Molecular Weight (calculated)
112536.0 Da
IEP (calculated)
8.629
GRAVY (calculated)
-0.200
Length
1021 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGADAPQPA RSGSGVTACS TSTALGRMNG GANASNNAAA AMEERFADVC KRKLVLDEST TRQAMQLFKE TKIILLSSMS SLGSGSPEEI ERSWCACVLY
0101: CVSKLGNAGK AKEDRGITLR QILRAFDLKI VDFFKEMPQF CIKVGFILTG LYGSDWEKRL ELQELQANLV HLCSLGRHYR RAYQELFLLN DGKPANNSSE
0201: LNVQQASEYY DFGWLLFLVL RNQASSAVKN LLTSTTELVS VLAVLIIHIP VRLRNFSIED SSCFAKKSDK GVNLIASLCE RYLTSEDELS KALQKTNILI
0301: KDILKKKPCS DVSECQQGSL SFIDPEGLTF FKNFLEEDSL KSSLQVLEKE YVNGLDTKGE LDARMFANDE DSLLGSGSLS GGALKLPGTK RKYDDVMASP
0401: TKSTASRAPM SPPRFCPSPN GNSFCNSKMA PFTPVSTAMT TAKWLRSTIS PLPSKPSGEL LRFFSACDKD VTDDIICRAA IILGAIFTGS SFGERMCTSL
0501: RNTSGMDAIW TEQRKMEALK LYYRVLESMC RAESQILSGS NLTSLLSNER FHRCMIACSA ELVLATHKTV TMMFPAVLEK TGITAFDLSK VIESFVRHED
0601: SLPRELKRHL NSLEERLLES MAWEKGSSMY NSLIVARPTL SAEINRLGLL AEPMPSLDAI AVHHDISLGG LPPLPFHKQP DKDEVRSPKR ACTERRNVLV
0701: DNSFRSPVKD VIKSKFLPPL QSAFASPTRP NPAAGGETCA ETGIGVFLSK ITKLAAIRIK CLCERLQLSQ QILERVYSLV QQIISQQTAL FFNRHIDQII
0801: LCCIYGVAKI SQLALTFKEI IFSYRKQSQC KPQVFRSVYV NWPSRSRSGK IGEDHVDIIT FYNEVFIPTV KPLLVDLGPG TSPNRNNEPK SGGDAAPFPE
0901: SPRLSRFPNL PDMSPKKVSA THNVYVSPLR SSKMDTLLSP SSKSYYACVG ESTHAFQSPS KDLNAINTRL NSGKKVNGRL NFDVVSDLVV ARSLSDQNGG
1001: SAAAMAVFGT KTPVKGEQQD P
0101: CVSKLGNAGK AKEDRGITLR QILRAFDLKI VDFFKEMPQF CIKVGFILTG LYGSDWEKRL ELQELQANLV HLCSLGRHYR RAYQELFLLN DGKPANNSSE
0201: LNVQQASEYY DFGWLLFLVL RNQASSAVKN LLTSTTELVS VLAVLIIHIP VRLRNFSIED SSCFAKKSDK GVNLIASLCE RYLTSEDELS KALQKTNILI
0301: KDILKKKPCS DVSECQQGSL SFIDPEGLTF FKNFLEEDSL KSSLQVLEKE YVNGLDTKGE LDARMFANDE DSLLGSGSLS GGALKLPGTK RKYDDVMASP
0401: TKSTASRAPM SPPRFCPSPN GNSFCNSKMA PFTPVSTAMT TAKWLRSTIS PLPSKPSGEL LRFFSACDKD VTDDIICRAA IILGAIFTGS SFGERMCTSL
0501: RNTSGMDAIW TEQRKMEALK LYYRVLESMC RAESQILSGS NLTSLLSNER FHRCMIACSA ELVLATHKTV TMMFPAVLEK TGITAFDLSK VIESFVRHED
0601: SLPRELKRHL NSLEERLLES MAWEKGSSMY NSLIVARPTL SAEINRLGLL AEPMPSLDAI AVHHDISLGG LPPLPFHKQP DKDEVRSPKR ACTERRNVLV
0701: DNSFRSPVKD VIKSKFLPPL QSAFASPTRP NPAAGGETCA ETGIGVFLSK ITKLAAIRIK CLCERLQLSQ QILERVYSLV QQIISQQTAL FFNRHIDQII
0801: LCCIYGVAKI SQLALTFKEI IFSYRKQSQC KPQVFRSVYV NWPSRSRSGK IGEDHVDIIT FYNEVFIPTV KPLLVDLGPG TSPNRNNEPK SGGDAAPFPE
0901: SPRLSRFPNL PDMSPKKVSA THNVYVSPLR SSKMDTLLSP SSKSYYACVG ESTHAFQSPS KDLNAINTRL NSGKKVNGRL NFDVVSDLVV ARSLSDQNGG
1001: SAAAMAVFGT KTPVKGEQQD P
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.