Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G257900.1 | Wheat | cytosol | 88.37 | 92.12 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 93.6 | 91.74 |
| Os03t0203800-01 | Rice | nucleus | 65.12 | 64.93 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 61.63 | 60.06 |
| Zm00001d003439_P001 | Maize | plastid | 21.8 | 59.06 |
| EER92677 | Sorghum | nucleus | 59.01 | 57.18 |
| Zm00001d028092_P001 | Maize | cytosol | 43.9 | 55.51 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 33.72 | 36.48 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 29.07 | 35.97 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 33.43 | 35.94 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 34.3 | 35.01 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 35.76 | 34.94 |
| GSMUA_Achr10P... | Banana | nucleus | 26.45 | 31.82 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 28.2 | 30.6 |
| KRH52092 | Soybean | nucleus | 26.45 | 28.98 |
| KRH61407 | Soybean | nucleus | 26.16 | 28.85 |
| KRH28363 | Soybean | nucleus | 26.74 | 27.79 |
| KRH77118 | Soybean | nucleus | 26.74 | 27.71 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 26.16 | 27.27 |
| CDY29570 | Canola | nucleus | 25.87 | 26.65 |
| Bra017840.1-P | Field mustard | nucleus | 25.87 | 26.1 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 26.74 | 25.99 |
| CDX72643 | Canola | nucleus | 25.58 | 25.88 |
| AT4G37630.1 | Thale cress | nucleus | 24.13 | 25.7 |
| TraesCS5D01G253200.1 | Wheat | nucleus | 25.87 | 25.0 |
| TraesCS5D01G253500.1 | Wheat | nucleus | 25.87 | 24.59 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 25.58 | 23.98 |
| TraesCS2D01G171700.1 | Wheat | nucleus | 22.97 | 23.1 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 14.83 | 20.24 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 19.77 | 20.18 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 18.31 | 20.13 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G257800.1 | EnsemblPlantsGene:TraesCS4D01G257800 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF273 | PFAM:PF00134 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.4 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:427913931..427915385
Molecular Weight (calculated)
37035.9 Da
IEP (calculated)
5.121
GRAVY (calculated)
-0.111
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDASTSAAP ATPTSTLICL EDGNDLFLDD DSPAGGLADS RLAADDGLLL LDRDDEYVAL MLSKEGAGAG AGACGEELDE WTKAARAVCV DWIVKTNARF
101: LFSGKTAYVA VTYLDRFLAQ RRVDRGKEWA LQLLSVACLS LAAKVEEHRV PRLPEFRPDE YDFDSASILR MELLVLGTLK WQMIAGTPFP YLSCFASRFR
201: HDERRAIVLR AVKCIFASIK VMSSVEYQPS TMALASILVA RGGREGTGTA PSLEEELKAI LGSSWQQLHT GHVYSCYSVM IQEEGRSTQS SREVAASSGV
301: SAAAPAGSPG TSVAMAVAAD DNNAIATASA DNNKRRRVRS PQRQ
101: LFSGKTAYVA VTYLDRFLAQ RRVDRGKEWA LQLLSVACLS LAAKVEEHRV PRLPEFRPDE YDFDSASILR MELLVLGTLK WQMIAGTPFP YLSCFASRFR
201: HDERRAIVLR AVKCIFASIK VMSSVEYQPS TMALASILVA RGGREGTGTA PSLEEELKAI LGSSWQQLHT GHVYSCYSVM IQEEGRSTQS SREVAASSGV
301: SAAAPAGSPG TSVAMAVAAD DNNAIATASA DNNKRRRVRS PQRQ
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.