Factsheet for TraesCS4A01G046900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G347600.1
TraesCS5A01G521700.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	TraesCS4A01G410900.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4B01G311000.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4D01G308900.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4A01G410900.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4B01G311000.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4D01G308900.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4B01G353600.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS4D01G347600.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS5A01G521700.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS6A01G078200.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS6B01G105100.1	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	91.74	93.6
TraesCS4B01G257900.1	Wheat	cytosol	84.62	90.0
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	28.21	82.5
Os03t0203800-01	Rice	nucleus	63.82	64.93
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	60.11	59.77
EER92677	Sorghum	nucleus	59.26	58.59
Zm00001d003439_P001	Maize	plastid	20.23	55.91
Zm00001d028092_P001	Maize	cytosol	41.88	54.04
GSMUA_Achr6P16910_001	Banana	cytosol	29.06	36.69
GSMUA_Achr6P07740_001	Banana	nucleus	33.05	36.48
TraesCS5A01G068600.1	Wheat	nucleus	36.47	36.47
GSMUA_Achr4P07110_001	Banana	nucleus	32.76	35.94
TraesCS4A01G234600.1	Wheat	cytosol	33.9	35.31
GSMUA_Achr10P...	Banana	nucleus	26.78	32.87
VIT_18s0001g09160.t01	Wine grape	nucleus	27.64	30.6
TraesCS5A01G200500.2	Wheat	nucleus	27.07	29.32
KRH28363	Soybean	nucleus	27.07	28.7
KRH52092	Soybean	nucleus	25.64	28.66
KRH77118	Soybean	nucleus	27.07	28.61
KRH61407	Soybean	nucleus	25.36	28.53
VIT_07s0129g00200.t01	Wine grape	nucleus	26.5	28.18
CDY29570	Canola	nucleus	25.64	26.95
TraesCS5A01G246800.1	Wheat	nucleus	26.78	26.63
TraesCS5A01G161000.1	Wheat	cytosol	26.78	26.55
TraesCS5A01G247000.1	Wheat	nucleus	26.78	26.48
Bra017840.1-P	Field mustard	nucleus	25.64	26.39
AT4G37630.1	Thale cress	nucleus	24.22	26.32
CDX72643	Canola	nucleus	25.36	26.18
TraesCS6A01G314900.1	Wheat	nucleus	25.64	25.14
TraesCS2A01G164800.1	Wheat	nucleus	23.65	24.06
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	18.52	20.97
TraesCS4A01G177400.1	Wheat	cytosol	19.37	20.42

Protein Annotations

EnsemblPlants:TraesCS4A01G046900.1	EnsemblPlantsGene:TraesCS4A01G046900	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF273	PFAM:PF00134	PIRSF:PIRSF001771	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:	:

Description

No Description!

Coordinates

chr4A:-:38372702..38374156

Molecular Weight (calculated)

37421.0 Da

IEP (calculated)

4.748

GRAVY (calculated)

-0.165

Length

351 amino acids

Sequence
(BLAST)

001: MGDASTSAAA PATPTSTLIC LEDGNDLFLD DDDSPAGGLA DSRLAAADGL LLLDRDDEYA ALMLSKEGAG AGGGGGACGE ELDEWTKAAR AACVDWIVKT
101: NARFLFSGKT AYVAVTYLDR FLAQRRVDRG KEWALQLLSV ACLSLAAKVE EHRVPRLPEF RPDEYDFDSA SILRMELLVL GTLNWRMIAA TPFPYLSCFA
201: ARFRHDERSA IVLRAVKCIF ASIKAMSSVE YQPSTMALAS ILAARGGSEG TGTGTGTGPS LEEELKAILG SSWQQLHTEH VYSCYSLMIQ EEDRSTQSGR
301: EVAASSGVSA AAPAGSPGTS VAMADDNNAI ATASADNNKR RRVHSPQPQR Q

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.