Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G080600.1 | Wheat | nucleus | 99.15 | 98.86 |
TraesCS5B01G075000.1 | Wheat | nucleus | 98.58 | 98.3 |
HORVU5Hr1G018180.1 | Barley | nucleus | 96.01 | 96.56 |
Os12t0588800-01 | Rice | nucleus | 76.07 | 73.15 |
Zm00001d041345_P001 | Maize | cytosol | 70.09 | 70.49 |
EES17294 | Sorghum | nucleus | 72.65 | 70.25 |
Zm00001d030894_P002 | Maize | nucleus | 68.66 | 69.86 |
TraesCS4A01G234600.1 | Wheat | cytosol | 56.7 | 59.05 |
GSMUA_Achr4P07110_001 | Banana | nucleus | 37.89 | 41.56 |
GSMUA_Achr10P... | Banana | nucleus | 31.91 | 39.16 |
GSMUA_Achr6P16910_001 | Banana | cytosol | 29.34 | 37.05 |
TraesCS4A01G046900.1 | Wheat | nucleus | 36.47 | 36.47 |
VIT_18s0001g09160.t01 | Wine grape | nucleus | 31.34 | 34.7 |
GSMUA_Achr6P07740_001 | Banana | nucleus | 31.05 | 34.28 |
KRH52092 | Soybean | nucleus | 29.06 | 32.48 |
KRH61407 | Soybean | nucleus | 28.49 | 32.05 |
VIT_07s0129g00200.t01 | Wine grape | nucleus | 29.34 | 31.21 |
KRH28363 | Soybean | nucleus | 28.49 | 30.21 |
KRH77118 | Soybean | nucleus | 28.21 | 29.82 |
AT4G37630.1 | Thale cress | nucleus | 27.07 | 29.41 |
TraesCS5A01G161000.1 | Wheat | cytosol | 29.34 | 29.1 |
CDY29570 | Canola | nucleus | 26.78 | 28.14 |
CDX72643 | Canola | nucleus | 27.07 | 27.94 |
Bra017840.1-P | Field mustard | nucleus | 27.07 | 27.86 |
TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 9.4 | 27.5 |
TraesCS5A01G200500.2 | Wheat | nucleus | 25.36 | 27.47 |
TraesCS5A01G246800.1 | Wheat | nucleus | 26.21 | 26.06 |
TraesCS5A01G247000.1 | Wheat | nucleus | 26.21 | 25.92 |
TraesCS6A01G314900.1 | Wheat | nucleus | 25.93 | 25.42 |
TraesCS2A01G164800.1 | Wheat | nucleus | 23.93 | 24.35 |
TraesCS4A01G177400.1 | Wheat | cytosol | 21.08 | 22.22 |
TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 17.95 | 20.32 |
Protein Annotations
EnsemblPlants:TraesCS5A01G068600.1 | EnsemblPlantsGene:TraesCS5A01G068600 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
PANTHER:PTHR10177:SF225 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
SMART:SM00385 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.4 | : | : |
Description
No Description!
Coordinates
chr5A:+:76955858..76957301
Molecular Weight (calculated)
37757.3 Da
IEP (calculated)
4.403
GRAVY (calculated)
-0.071
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGMEEAEDY ASCAFSLTCP EDGAELGDGV VDDGDLFLFY AGGGAADDED GDNEYVEQLV SKEASFCSSS DSGDADCSSA ASEDWFLQAR LAAVKWILET
101: RGCFGFGHRT AYLAIAYFDR FFLRRRVDRA AMPWAARLLS VACVSVAAKM EEYCAPALSE LDAGGGYEFC SASVRRMELL VLSTLGWRMA AVTPFDYLPC
201: FSSRLDRHDG RGGGGHDPAR VALKSIGFIF ATAEAGSVLD YRPSTVAAAA ILAASYGALL TKEALESKMD NLSPSCPIEK EHVHACYSMM VGDLRNRKSN
301: GKRSLPCSDS NEVATSTYDS VLVDDVADTA AFMAAVSEMN KRIRLEPPGI H
101: RGCFGFGHRT AYLAIAYFDR FFLRRRVDRA AMPWAARLLS VACVSVAAKM EEYCAPALSE LDAGGGYEFC SASVRRMELL VLSTLGWRMA AVTPFDYLPC
201: FSSRLDRHDG RGGGGHDPAR VALKSIGFIF ATAEAGSVLD YRPSTVAAAA ILAASYGALL TKEALESKMD NLSPSCPIEK EHVHACYSMM VGDLRNRKSN
301: GKRSLPCSDS NEVATSTYDS VLVDDVADTA AFMAAVSEMN KRIRLEPPGI H
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.