Factsheet for TraesCS5A01G246800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G247000.1	Wheat	nucleus	95.18	94.65
TraesCS5B01G243900.1	Wheat	nucleus	92.92	92.39
TraesCS5D01G253200.1	Wheat	nucleus	92.35	91.57
TraesCS5B01G244100.1	Wheat	nucleus	92.63	90.83
TraesCS5D01G253500.1	Wheat	nucleus	92.63	90.33
EER96886	Sorghum	nucleus	69.69	65.08
Os09t0466100-01	Rice	nucleus	65.44	64.89
Zm00001d005928_P002	Maize	nucleus	65.44	63.99
HORVU7Hr1G033350.3	Barley	cytosol	53.54	62.79
HORVU0Hr1G013250.1	Barley	cytosol	34.56	57.01
TraesCS6A01G314900.1	Wheat	nucleus	47.59	46.93
TraesCS2A01G164800.1	Wheat	nucleus	38.53	39.42
TraesCS5A01G200500.2	Wheat	nucleus	33.43	36.42
TraesCS5A01G161000.1	Wheat	cytosol	28.9	28.81
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	24.65	28.06
TraesCS4A01G177400.1	Wheat	cytosol	25.5	27.03
TraesCS4A01G046900.1	Wheat	nucleus	26.63	26.78
TraesCS5A01G068600.1	Wheat	nucleus	26.06	26.21
TraesCS4A01G234600.1	Wheat	cytosol	24.36	25.52
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	6.23	18.33

Protein Annotations

EnsemblPlants:TraesCS5A01G246800.1	EnsemblPlantsGene:TraesCS5A01G246800	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF339	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:

Description

No Description!

Coordinates

chr5A:+:461007606..461009268

Molecular Weight (calculated)

37829.0 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.027

Length

353 amino acids

Sequence
(BLAST)

001: MAPSYEMAAS ILLCAEDSSS IFGFGDEQEA AAGARASGSP YCGGELAVEF PLPSEECVAR WVATEAEHMP REDYAERLRA GGVDLRVRVD AVDWIWKVHT
101: YYGFGPVTAC LALNYMDRFL SLYQIPEGKA WMTQLLSVAC LSLAAKMDET SVPQSIDLQA VDARYVFEAK TIQRMELLVL STLKWRMQAV TPFSYLDYFL
201: HQLCGGNAPS RQAVRDATEL ILCISGGTSC LEFRPSEIAA TVAAAVAGEE HAGHKPACCT HVDKERVLSC HEAMIQATGA AVPPPKTAGL MGRAYSPAMS
301: APRSPTGVLD LDAGYLSCTS EGASTATTTA SSPPASSGFD SSPVSSKRRK ISR

Best Arabidopsis Sequence Match ( AT5G10440.1 )
(BLAST)

001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS

Arabidopsis Description

CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.