Factsheet for TraesCS5D01G253200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G246800.1	Wheat	nucleus	91.57	92.35
TraesCS5B01G243900.1	Wheat	nucleus	91.57	91.83
TraesCS5B01G244100.1	Wheat	nucleus	91.29	90.28
TraesCS5D01G253500.1	Wheat	nucleus	90.17	88.67
EER96886	Sorghum	nucleus	68.26	64.29
Os09t0466100-01	Rice	nucleus	63.76	63.76
Zm00001d005928_P002	Maize	nucleus	64.04	63.16
HORVU7Hr1G033350.3	Barley	cytosol	53.37	63.12
HORVU0Hr1G013250.1	Barley	cytosol	33.99	56.54
TraesCS6D01G294200.1	Wheat	nucleus	29.49	41.67
TraesCS2D01G171700.1	Wheat	nucleus	39.33	40.94
TraesCS5D01G206200.1	Wheat	nucleus	32.58	31.61
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	24.44	27.8
TraesCS5D01G165900.1	Wheat	cytosol	27.25	27.4
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	24.72	26.11
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	25.0	25.87
TraesCS4D01G079400.1	Wheat	cytosol	24.16	25.52
TraesCS5D01G080600.1	Wheat	nucleus	25.0	25.28

Protein Annotations

EnsemblPlants:TraesCS5D01G253200.1	EnsemblPlantsGene:TraesCS5D01G253200	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF339	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:

Description

No Description!

Coordinates

chr5D:+:360048707..360050423

Molecular Weight (calculated)

38027.1 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.056

Length

356 amino acids

Sequence
(BLAST)

001: MAPSYEMAAS ILLCAEDSSS IFGIGDGQEE AAAGARAGGS PYCGGGGELA VEFPLPSEEC VARWVATEAE HMPREDYAER LRAGGVDPRV RMDAVDWIWK
101: VHTYYGFGPV TACLALNYMD RFLSLYQIPE GKAWMTQLLS VACLSLAAKM DETSVPQSID LQAGDARYVF EAKTIQRMEL LVLSTLKWRM QSVTPFSYLD
201: YFLHQLSGGN APSRQAVREA AELILCISRG TNCLEFRPSE IAATVAAAVA VEEHPAHRAA CCTHVDKERV LSCHAAMIQA TGAAVPPPKT AGLMGSSYSP
301: AVSAPQSPTG VLDLDAGYLS CTSDGASTTT TMASSPSESS GFDSSPVSSK RRKISR

Best Arabidopsis Sequence Match ( AT5G10440.1 )
(BLAST)

001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS

Arabidopsis Description

CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.