Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G068600.1 | Wheat | nucleus | 98.86 | 99.15 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 98.3 | 98.3 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 95.45 | 96.28 |
| Os12t0588800-01 | Rice | nucleus | 76.14 | 73.42 |
| Zm00001d041345_P001 | Maize | cytosol | 69.89 | 70.49 |
| EES17294 | Sorghum | nucleus | 72.44 | 70.25 |
| Zm00001d030894_P002 | Maize | nucleus | 68.75 | 70.14 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 56.82 | 59.35 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 38.07 | 41.88 |
| GSMUA_Achr10P... | Banana | nucleus | 31.82 | 39.16 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 29.26 | 37.05 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 34.94 | 35.76 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 31.25 | 34.7 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 30.97 | 34.28 |
| KRH52092 | Soybean | nucleus | 28.98 | 32.48 |
| KRH61407 | Soybean | nucleus | 28.41 | 32.05 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 29.55 | 31.52 |
| KRH28363 | Soybean | nucleus | 28.41 | 30.21 |
| KRH77118 | Soybean | nucleus | 28.12 | 29.82 |
| AT4G37630.1 | Thale cress | nucleus | 26.99 | 29.41 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 29.26 | 29.1 |
| CDY29570 | Canola | nucleus | 26.7 | 28.14 |
| CDX72643 | Canola | nucleus | 26.99 | 27.94 |
| Bra017840.1-P | Field mustard | nucleus | 26.99 | 27.86 |
| TraesCS5D01G253500.1 | Wheat | nucleus | 25.85 | 25.14 |
| TraesCS5D01G253200.1 | Wheat | nucleus | 25.28 | 25.0 |
| TraesCS2D01G171700.1 | Wheat | nucleus | 23.58 | 24.27 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 24.72 | 23.71 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 15.91 | 22.22 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 21.02 | 21.96 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 17.33 | 19.49 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G080600.1 | EnsemblPlantsGene:TraesCS5D01G080600 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF225 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.4 | : | : |
Description
No Description!
Coordinates
chr5D:+:80436765..80438229
Molecular Weight (calculated)
37892.4 Da
IEP (calculated)
4.403
GRAVY (calculated)
-0.070
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGMEEAEDY ASCAFSLTCP EDGAELGDGV VDDGDLFFFY SGGAAAADDE DGDNEYVEQL VSKEASFCSS SDSGDADCSS AASEDWFLQA RLAAVKWILE
101: TRGCFGFGHR TAYLAIAYFD RFFLRRRVDR AAMPWAARLL SVACVSVAAK MEEYCAPALS ELDAGGGYEF CSASVRRMEL LVLSTLGWRM AAVTPFDYLP
201: CFSSRLDRHD GRGGGGHDPA RVALKSIGFI FATAEAGSVL DYRPSTVAAA AILAASYGAL LTKEALESKM DNLSPSCPIE KEHVHACYSM MVGDLRNRKS
301: NGKRSLPCSD SNEVATSTYD SVLVDDVADT AAFMAAVSEM NKRIRLEPPG IH
101: TRGCFGFGHR TAYLAIAYFD RFFLRRRVDR AAMPWAARLL SVACVSVAAK MEEYCAPALS ELDAGGGYEF CSASVRRMEL LVLSTLGWRM AAVTPFDYLP
201: CFSSRLDRHD GRGGGGHDPA RVALKSIGFI FATAEAGSVL DYRPSTVAAA AILAASYGAL LTKEALESKM DNLSPSCPIE KEHVHACYSM MVGDLRNRKS
301: NGKRSLPCSD SNEVATSTYD SVLVDDVADT AAFMAAVSEM NKRIRLEPPG IH
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENV
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENV
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.