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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG90996 nucleus
KRG99255 nucleus
KRH04529 nucleus
KRH07603 nucleus
KRH22237
KRH27099
KRH28363 nucleus
KRH28424 nucleus
KRH31935
KRH35760 nucleus
KRH45743 nucleus
KRH51709 nucleus
KRH57973 nucleus
KRH61047 nucleus
KRH69067
KRH69476 nucleus
KRH71094 nucleus
KRH71526
KRH74675 nucleus
KRH75571 nucleus
KRH77050 nucleus
KRH77118 nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G12280.1 KRH07603 AT1G47870.1 20407024
AT3G12280.1 KRH51709 AT1G47870.1 20407024
AT3G12280.1 KRH61047 AT1G47870.1 20407024
AT3G12280.1 KRH07603 AT1G47870.1 20706207
AT3G12280.1 KRH51709 AT1G47870.1 20706207
AT3G12280.1 KRH61047 AT1G47870.1 20706207
AT3G12280.1 KRG99255 AT1G70210.1 20407024
AT3G12280.1 KRH45743 AT1G70210.1 20407024
AT3G12280.1 KRH69476 AT1G70210.1 20407024
AT3G12280.1 KRH74675 AT1G70210.1 20407024
AT3G12280.1 KRH22237 AT3G20740.1 15221456
AT3G12280.1 KRH27099 AT3G20740.1 15221456
AT3G12280.1 KRH31935 AT3G20740.1 15221456
AT3G12280.1 KRH71526 AT3G20740.1 15221456
AT3G12280.1 KRH22237 AT3G20740.1 18812497
AT3G12280.1 KRH27099 AT3G20740.1 18812497
AT3G12280.1 KRH31935 AT3G20740.1 18812497
AT3G12280.1 KRH71526 AT3G20740.1 18812497
AT3G12280.1 KRH71094 AT3G24140.1 24571519
AT3G12280.1 KRH75571 AT3G24140.1 24571519
AT3G12280.1 KRH04529 AT3G50070.1 20407024
AT3G12280.1 KRH28424 AT3G50070.1 20407024
AT3G12280.1 KRH57973 AT3G50070.1 20407024
AT3G12280.1 KRH77050 AT3G50070.1 20407024
AT3G12280.1 KRH69067 AT3G55760.1 20706207
AT3G12280.1 KRG90996 AT4G34160.1 20407024
AT3G12280.1 KRH35760 AT4G34160.1 20407024
AT3G12280.1 KRH28363 AT4G37630.1 20407024
AT3G12280.1 KRH77118 AT4G37630.1 20407024
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH20664 Soybean nucleus 98.13 98.13
KRH13310 Soybean nucleus 94.87 95.72
VIT_04s0008g02780.t01 Wine grape nucleus 74.95 75.55
PGSC0003DMT400030280 Potato nucleus 70.61 70.47
Solyc09g091280.2.1 Tomato cytosol 70.12 69.84
CDY52614 Canola cytosol 68.54 68.95
AT3G12280.1 Thale cress nucleus 68.74 68.81
CDY08440 Canola nucleus 68.64 68.5
Bra034764.1-P Field mustard nucleus 68.54 68.41
CDY50559 Canola nucleus 68.05 67.98
CDY42141 Canola cytosol 68.05 67.85
Bra038707.1-P Field mustard nucleus 67.85 67.52
CDX73827 Canola nucleus 66.27 66.47
Bra001446.1-P Field mustard nucleus 66.17 65.34
GSMUA_Achr8P00470_001 Banana nucleus 63.31 63.88
Os08t0538700-01 Rice nucleus 62.23 62.48
EES14166 Sorghum nucleus 61.24 61.36
CDY00765 Canola mitochondrion 67.26 61.11
Zm00001d052695_P016 Maize nucleus 59.57 59.98
Zm00001d031678_P003 Maize cytosol, nucleus, plastid 60.45 59.92
TraesCS7A01G264800.1 Wheat nucleus 59.76 59.35
TraesCS7B01G162700.4 Wheat nucleus, plastid 59.66 59.26
TraesCS7D01G265600.3 Wheat nucleus 59.66 58.79
HORVU7Hr1G055440.9 Barley plastid 59.57 56.77
GSMUA_Achr6P08220_001 Banana nucleus 54.54 55.24
Os11t0533500-01 Rice nucleus 49.7 51.53
Zm00001d007407_P006 Maize cytosol, nucleus, plastid 43.2 50.17
TraesCS4A01G143200.1 Wheat plastid 48.13 49.75
TraesCS4D01G159600.1 Wheat cytosol, nucleus, plastid 47.93 49.54
TraesCS4B01G162200.1 Wheat nucleus 47.83 49.44
OQU83580 Sorghum plastid 42.11 49.19
HORVU4Hr1G039890.2 Barley cytosol, nucleus, plastid 47.34 48.98
KXG21076 Sorghum plastid 42.01 48.63
CDY52391 Canola nucleus 11.05 48.48
Zm00001d052666_P014 Maize nucleus 42.31 46.53
KXG26019 Sorghum cytosol 11.64 43.87
Protein Annotations
Gene3D:1.10.472.10EntrezGene:100777429MapMan:13.1.2.1EMBL:ACUP02002706ncoils:CoilInterPro:Cyclin-like
InterPro:Cyclin-like_sfEnsemblPlantsGene:GLYMA_04G192200GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006357GO:GO:0006915
GO:GO:0007049GO:GO:0008134GO:GO:0008150GO:GO:0008152GO:GO:0008219GO:GO:0008285
GO:GO:0009058GO:GO:0009987GO:GO:0035189GO:GO:0045892GO:GO:0051726GO:GO:2000134
UniProt:I1JXF7EnsemblPlants:KRH63701ProteinID:KRH63701ProteinID:KRH63701.1ProteinID:KRH63702.1ProteinID:KRH63703.1
PFAM:PF01857PFAM:PF01858PFAM:PF11934PANTHER:PTHR13742PANTHER:PTHR13742:SF17InterPro:RB1
InterPro:RB_AInterPro:RB_BInterPro:RB_NInterPro:RB_famSMART:SM01367SMART:SM01368
SUPFAM:SSF47954UniParc:UPI0002339AB9SEG:seg:::
Description
hypothetical protein
Coordinates
chr4:+:46323763..46332721
Molecular Weight (calculated)
112707.0 Da
IEP (calculated)
7.725
GRAVY (calculated)
-0.246
Length
1014 amino acids
Sequence
(BLAST)
0001: MSPPPAESNA MEDGKSENGG DQVESRFFEF CKNGLALEEK SCKEAANLFG ETKHILLSNF SSMGNGTSEE AERYWFAFIL YSVKKLIQKN DEGEKEDTEN
0101: IGLSLCRILR AAKLNIADFF KELPQFVVKA GPTLSNLYGT DWENRLEAKE MHANAIHLKI LSKYYKRVFG EFFVATDTNA EINSPITVHA SEYHRFGWLL
0201: FLALRVHAFS RFKDLVTCTN GLISILAILI IHVPTRFWNF NIHDSSRFVK KSNKGVDLLA SLCNIYNTSE DELRKTMEKA NNVIADILKK QPCLASECET
0301: GNLENIDKDG LTYFKDLMEE SSLPSSLSML EKDYDYMIHN KSELDERLFI NEDDSLLASV SLSGGSVSAG GVKRKFDSMA SPAKTITSPL SPHRSPASHA
0401: NGIPGSANSK MAATPVSTAM TTAKWLRTVI SPLPSKPSPE LERFLTSCDR DATSDVVRRA QIILQAIFPS SPLGERCVTG SLQSANVVDN IWAEQRRLEA
0501: LKLYYRVLEA MCRAEAQVLH ATNLTSLLTN ERFHRCMLAC SAELVLATHK TVTMLFPAVL ERTGITAFDL SKVIESFIRH EESLPRELRR HLNSLEERLL
0601: ESMVWEKGSS MHNSLAVARP SLSAEINSLG LLAEPMPSLD EIAMHINFSC GGLPPVPTLP KLESPSNQNG DIRSPKRNVL MERNSFTSPV KDCLLPCIIL
0701: KSKLPPPPLQ SAFASPTKPN PGGGGETCAE TGINIFFGKI IKLGAVRISG MVERLQLSQQ IRENVYSLFQ RILNQWTSLF FNRHIDQIIL CCFYGVAKIS
0801: QLNLTFKEIV YNYRKQPHCK PQVFRSVFVD WSLARRNGRT GQEHIDIITF YNEIFIPSVK PLLVELGPAG PTTKSDRIPE VNKNDGHLAQ CPGSPKISPF
0901: PTLPDMSPKK VSATHNVYVS PLRSSKMEAL ISHSSKSYYA CVGESTHAYQ SPSKDLTAIN NRLNGNRKVR GPLNFDDVDF GLVSDSMVAN SLYLQNGSCA
1001: SSSGAPFKSE QPDS
Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.