CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93247
KRH03754
KRH03906
KRH11866
KRH25124
KRH26350
KRH30550
KRH36887
KRH42252
KRH44087
KRH48835
KRH56563
KRH56652
KRH57185
KRH57190
KRH58370
KRH66485
KRH75956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	KRH03754	AT1G52730.1	20706207
AT3G50070.1	KRH56652	AT1G52730.1	20706207
AT3G50070.1	KRH25124	AT2G27970.1	20706207
AT3G50070.1	KRH30550	AT2G27970.1	20706207
AT3G50070.1	KRH11866	AT3G48750.1	20706207
AT3G50070.1	KRH36887	AT3G48750.1	20706207
AT3G50070.1	KRH42252	AT3G48750.1	20706207
AT3G50070.1	KRH58370	AT3G48750.1	20706207
AT3G50070.1	KRH75956	AT3G60750.1	20706207
AT3G50070.1	KRH48835	AT4G09320.1	20706207
AT3G50070.1	KRH66485	AT4G09320.1	20706207
AT3G50070.1	KRH03906	AT4G24820.1	20706207
AT3G50070.1	KRH57185	AT4G24820.1	20706207
AT3G50070.1	KRH57190	AT4G24820.1	20706207
AT3G50070.1	KRH26350	AT5G06110.1	20706207
AT3G50070.1	KRH44087	AT5G06110.1	20706207
AT3G50070.1	KRG93247	AT5G40460.1	20706207
AT3G50070.1	KRH56563	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77050	Soybean	nucleus, plastid	86.27	86.53
KRH04529	Soybean	nucleus	64.48	58.22
KRH57973	Soybean	nucleus	63.28	55.35
PGSC0003DMT400011487	Potato	nucleus	24.78	45.11
CDY23022	Canola	nucleus	43.88	44.68
CDY30607	Canola	nucleus	46.87	44.48
Bra036051.1-P	Field mustard	nucleus	46.27	43.91
Bra012909.1-P	Field mustard	nucleus	42.99	43.9
CDY02095	Canola	nucleus	42.99	43.9
AT3G50070.1	Thale cress	nucleus	47.16	43.77
CDY17742	Canola	nucleus	45.97	43.38
CDY01425	Canola	nucleus	45.67	43.22
CDX68573	Canola	nucleus	45.37	43.18
CDY12825	Canola	nucleus	45.97	43.02
PGSC0003DMT400064307	Potato	nucleus	46.57	42.98
CDX83112	Canola	nucleus	45.07	42.9
Bra029992.1-P	Field mustard	nucleus	45.07	42.9
KRG90996	Soybean	nucleus	50.15	42.75
Bra012146.1-P	Field mustard	nucleus	45.07	42.66
Solyc02g092980.2.1	Tomato	nucleus	45.67	42.62
PGSC0003DMT400031329	Potato	nucleus	40.3	41.93
KRH61348	Soybean	nucleus	43.28	41.55
KRH35760	Soybean	nucleus	49.25	41.04
KRH52038	Soybean	nucleus	44.18	40.88
PGSC0003DMT400068629	Potato	cytosol	27.46	38.33
Solyc02g064900.1.1	Tomato	nucleus	39.4	38.15
KRH05626	Soybean	cytosol	24.48	38.14
KRH15412	Soybean	cytosol	30.45	37.78
AT5G67260.2	Thale cress	nucleus	45.37	37.62
PGSC0003DMT400068627	Potato	nucleus	32.24	35.06
CDY30606	Canola	cytosol, nucleus, plastid	17.91	34.88
Solyc02g064860.1.1	Tomato	nucleus	23.88	34.04
Solyc02g064910.1.1	Tomato	nucleus	23.58	33.62
KRH69654	Soybean	cytosol	22.69	31.28
GSMUA_Achr1P09780_001	Banana	cytosol	36.12	31.19
KRH35652	Soybean	nucleus	28.06	31.13
GSMUA_Achr2P05260_001	Banana	nucleus	31.64	30.72
KRH16827	Soybean	nucleus	31.94	30.14
KRH69476	Soybean	nucleus	30.45	30.09
KRG91131	Soybean	nucleus	28.96	29.94
KRH62196	Soybean	nucleus	31.04	29.55
KRH72435	Soybean	nucleus	31.34	29.41
TraesCS5D01G165900.1	Wheat	cytosol	31.04	29.38
KRH74510	Soybean	nucleus	31.64	29.36
HORVU5Hr1G050270.8	Barley	cytosol	30.75	29.34
GSMUA_Achr4P20220_001	Banana	nucleus	31.64	29.28
KRH52917	Soybean	nucleus	30.75	29.26
KRH45568	Soybean	nucleus	30.15	29.19
TraesCS5B01G158400.1	Wheat	cytosol	30.75	29.1
TraesCS5A01G161000.1	Wheat	cytosol	30.75	29.1
GSMUA_AchrUn_...	Banana	cytosol	27.46	29.02
GSMUA_Achr3P13140_001	Banana	nucleus	35.22	28.99
KRH58137	Soybean	nucleus	26.87	28.3
Os09t0111100-01	Rice	cytosol	30.75	28.3
KRG99448	Soybean	nucleus	30.15	28.21
GSMUA_Achr3P01010_001	Banana	nucleus	34.03	28.01
KRG99255	Soybean	nucleus	28.96	27.87
KRH22479	Soybean	cytosol	26.27	27.85
Zm00001d019696_P001	Maize	cytosol	31.94	27.65
KRH26876	Soybean	nucleus	25.97	27.62
KRH45743	Soybean	nucleus	29.25	27.22
KRH61407	Soybean	nucleus	25.07	26.92
EER96424	Sorghum	cytosol	30.45	26.7
KRH04404	Soybean	vacuole	26.87	26.47
KRH52092	Soybean	nucleus	24.48	26.11
Zm00001d005293_P001	Maize	cytosol	30.15	25.83
KRH74675	Soybean	nucleus, plastid	29.25	25.65
KRH56054	Soybean	cytosol, nucleus, plasma membrane	25.07	25.53
KRH25470	Soybean	nucleus	24.48	25.31
KRH10729	Soybean	nucleus	19.7	24.26
KRH21593	Soybean	nucleus	19.4	23.9
KRH65892	Soybean	cytosol	20.3	23.61
KRH28363	Soybean	nucleus	22.99	23.26
KRH75669	Soybean	cytosol	19.7	22.84
KRH77118	Soybean	nucleus	22.09	22.29
KRH54628	Soybean	cytosol	9.25	20.26
KRH54622	Soybean	cytosol	9.25	20.26

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100807175	MapMan:13.1.1.1.4	EMBL:ACUP02006750	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_11G052500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:K7LN63	EnsemblPlants:KRH28424	ProteinID:KRH28424	ProteinID:KRH28424.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF216	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0001BA67F9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:3954875..3956202

Molecular Weight (calculated)

38138.4 Da

IEP (calculated)

9.666

GRAVY (calculated)

-0.153

Length

335 amino acids

Sequence
(BLAST)

001: MPRPHSPSFL LCQEHYSFTF QQHSQTLSNT QPSPLTFPDN LQHDLLLSLL SKQRATHSTL SPRHHVVRLI SKLSNFHGFS PLTTVLAVNY FDRFVATLRF
101: QSELKPWMTQ LTAVACVSLA AKVEETRVPL LSDFQVEESK FLFEAKTIQR MELLVLSTLE WKMNPVTPIS FFQHFLTSLG LKRHLHSESL RRCQRLLLSV
201: IADSRVMSYL PSTVAAAIMI HVIKEIEPLN ATEYRNQLLG LLKTSEEQVD ECYKLMLRLL VCSKGIHNLR RKRLSEPSSP DGVIDASFSC DSSNDSWTVA
301: SPSVGPLIKR RKPQDQQMPL PPVNRVAIDV LKTPR

Best Arabidopsis Sequence Match ( AT3G50070.1 )
(BLAST)

001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R

Arabidopsis Description

CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.