Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83112 | Canola | nucleus | 80.06 | 82.1 |
| Bra029992.1-P | Field mustard | nucleus | 80.06 | 82.1 |
| CDY23022 | Canola | nucleus | 74.24 | 81.46 |
| CDX68573 | Canola | nucleus | 79.22 | 81.25 |
| CDY02095 | Canola | nucleus | 73.41 | 80.79 |
| Bra012909.1-P | Field mustard | nucleus | 73.41 | 80.79 |
| AT5G67260.2 | Thale cress | nucleus | 68.98 | 61.63 |
| KRH04529 | Soybean | nucleus | 53.19 | 51.75 |
| KRH57973 | Soybean | nucleus | 52.91 | 49.87 |
| Solyc02g092980.2.1 | Tomato | nucleus | 48.75 | 49.03 |
| PGSC0003DMT400064307 | Potato | nucleus | 48.48 | 48.21 |
| KRH77050 | Soybean | nucleus, plastid | 44.32 | 47.9 |
| KRH28424 | Soybean | nucleus | 43.77 | 47.16 |
| PGSC0003DMT400031329 | Potato | nucleus | 41.83 | 46.89 |
| PGSC0003DMT400068629 | Potato | cytosol | 29.92 | 45.0 |
| Solyc02g064900.1.1 | Tomato | nucleus | 41.83 | 43.64 |
| AT4G34160.1 | Thale cress | nucleus | 44.88 | 43.09 |
| Solyc02g064910.1.1 | Tomato | nucleus | 27.42 | 42.13 |
| Solyc02g064860.1.1 | Tomato | nucleus | 27.42 | 42.13 |
| PGSC0003DMT400011487 | Potato | nucleus | 21.33 | 41.85 |
| PGSC0003DMT400068627 | Potato | nucleus | 35.46 | 41.56 |
| AT1G70210.1 | Thale cress | nucleus | 30.47 | 32.45 |
| AT2G22490.2 | Thale cress | nucleus | 30.75 | 30.66 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 29.92 | 30.51 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 29.36 | 30.2 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 29.09 | 29.66 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 29.09 | 29.66 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 31.58 | 29.38 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 29.36 | 29.28 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 27.98 | 29.28 |
| AT5G65420.3 | Thale cress | nucleus | 25.76 | 29.25 |
| Os09t0111100-01 | Rice | cytosol | 29.09 | 28.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.93 | 28.39 |
| AT5G10440.1 | Thale cress | nucleus | 23.27 | 28.19 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 31.58 | 28.01 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 31.02 | 27.52 |
| Zm00001d019696_P001 | Maize | cytosol | 28.25 | 26.36 |
| Zm00001d005293_P001 | Maize | cytosol | 27.98 | 25.83 |
| EER96424 | Sorghum | cytosol | 27.15 | 25.65 |
| AT4G03270.1 | Thale cress | nucleus | 20.5 | 24.5 |
| AT4G37630.1 | Thale cress | nucleus | 20.78 | 23.22 |
| AT5G02110.1 | Thale cress | cytosol | 19.67 | 20.82 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:824169 | UniProt:A0A178VE15 | ProteinID:AEE78623.1 | ArrayExpress:AT3G50070 |
| EnsemblPlantsGene:AT3G50070 | RefSeq:AT3G50070 | TAIR:AT3G50070 | RefSeq:AT3G50070-TAIR-G | EnsemblPlants:AT3G50070.1 | TAIR:AT3G50070.1 |
| EMBL:AY052665 | EMBL:AY063729 | EMBL:AY087498 | Unigene:At.26490 | ProteinID:CAB62115.1 | Symbol:CYCD3;3 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010444 |
| GO:GO:0030154 | GO:GO:0048316 | GO:GO:0051301 | RefSeq:NP_190576.1 | ProteinID:OAP04034.1 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF216 | UniProt:Q9SN11 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000009EA32 | SEG:seg | : |
Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
Coordinates
chr3:-:18565134..18566834
Molecular Weight (calculated)
41739.9 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.134
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.