Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g064910.1.1 | Tomato | nucleus | 59.58 | 60.85 |
| Solyc02g064860.1.1 | Tomato | nucleus | 58.75 | 60.0 |
| Solyc02g064900.1.1 | Tomato | nucleus | 86.25 | 59.83 |
| PGSC0003DMT400068627 | Potato | nucleus | 76.67 | 59.74 |
| PGSC0003DMT400031329 | Potato | nucleus | 61.25 | 45.65 |
| PGSC0003DMT400064307 | Potato | nucleus | 65.83 | 43.53 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 27.5 | 38.37 |
| PGSC0003DMT400066557 | Potato | nucleus | 48.33 | 32.4 |
| PGSC0003DMT400011487 | Potato | nucleus | 24.58 | 32.07 |
| PGSC0003DMT400020648 | Potato | nucleus | 43.75 | 31.63 |
| CDY02095 | Canola | nucleus | 42.5 | 31.1 |
| Bra012909.1-P | Field mustard | nucleus | 42.5 | 31.1 |
| CDY23022 | Canola | nucleus | 42.5 | 31.0 |
| KRH04529 | Soybean | nucleus | 47.92 | 31.0 |
| KRH57973 | Soybean | nucleus | 48.75 | 30.55 |
| CDY01425 | Canola | nucleus | 44.17 | 29.94 |
| AT3G50070.1 | Thale cress | nucleus | 45.0 | 29.92 |
| Bra012146.1-P | Field mustard | nucleus | 43.75 | 29.66 |
| CDX83112 | Canola | nucleus | 43.33 | 29.55 |
| Bra029992.1-P | Field mustard | nucleus | 43.33 | 29.55 |
| CDY12825 | Canola | nucleus | 43.75 | 29.33 |
| CDX68573 | Canola | nucleus | 42.92 | 29.26 |
| PGSC0003DMT400039904 | Potato | nucleus | 39.17 | 29.19 |
| CDY30607 | Canola | nucleus | 42.5 | 28.9 |
| Bra036051.1-P | Field mustard | nucleus | 42.08 | 28.61 |
| CDY17742 | Canola | nucleus | 42.08 | 28.45 |
| KRH77050 | Soybean | nucleus, plastid | 39.58 | 28.44 |
| KRH28424 | Soybean | nucleus | 38.33 | 27.46 |
| AT5G67260.2 | Thale cress | nucleus | 45.83 | 27.23 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.0 | 26.5 |
| PGSC0003DMT400033588 | Potato | nucleus | 35.42 | 23.88 |
| PGSC0003DMT400037827 | Potato | nucleus | 33.33 | 23.26 |
| PGSC0003DMT400040287 | Potato | nucleus | 31.25 | 22.32 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 31.67 | 22.03 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 35.42 | 21.91 |
| PGSC0003DMT400088718 | Potato | nucleus | 27.92 | 21.61 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 31.67 | 20.99 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.42 | 20.8 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 35.0 | 20.64 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.42 | 20.62 |
| Os09t0111100-01 | Rice | cytosol | 31.25 | 20.6 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 30.0 | 20.34 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 30.0 | 20.34 |
| PGSC0003DMT400041637 | Potato | nucleus | 32.92 | 20.05 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 33.75 | 19.9 |
| Zm00001d019696_P001 | Maize | cytosol | 29.17 | 18.09 |
| EER96424 | Sorghum | cytosol | 28.75 | 18.06 |
| Zm00001d005293_P001 | Maize | cytosol | 27.92 | 17.14 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 20.83 | 16.67 |
| PGSC0003DMT400039033 | Potato | nucleus | 21.25 | 16.4 |
| PGSC0003DMT400012934 | Potato | nucleus | 19.58 | 15.51 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102578422 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| UniProt:M1CJB1 | PFAM:PF00134 | EnsemblPlantsGene:PGSC0003DMG400026686 | PGSC:PGSC0003DMG400026686 | EnsemblPlants:PGSC0003DMT400068629 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF242 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI000295861B |
| RefSeq:XP_006367192.1 | SEG:seg | : | : | : | : |
Description
Cyclin D [Source:PGSC_GENE;Acc:PGSC0003DMG400026686]
Coordinates
chr2:-:23167753..23168955
Molecular Weight (calculated)
27255.3 Da
IEP (calculated)
4.663
GRAVY (calculated)
0.160
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLHLQEQNI EPQNPILNFD ALLCEDDRLD EGDLGEGYHS DERNQNGVIE NVKKISPLIE CDLFLEDGEV ETLLSNEKVN LFYCTSLVSD GVLLGVRKKS
101: LEWMLTVIDH YGFNALTVVL AVNYFDRFIS GFLFQKVKPW MSQLVAVACL SIAAKVEEIQ VPLLLDLQVS NPKYVFEAKT IQKIELLVLS TLKWKMNPVT
201: PLSFIDHIIR RFGLMTNLHS EFQRKCGNII LGIITGEISI
101: LEWMLTVIDH YGFNALTVVL AVNYFDRFIS GFLFQKVKPW MSQLVAVACL SIAAKVEEIQ VPLLLDLQVS NPKYVFEAKT IQKIELLVLS TLKWKMNPVT
201: PLSFIDHIIR RFGLMTNLHS EFQRKCGNII LGIITGEISI
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.