Factsheet for PGSC0003DMT400066557

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400025910
PGSC0003DMT400040785
PGSC0003DMT400048460
PGSC0003DMT400057203
PGSC0003DMT400066394
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34160.1	PGSC0003DMT400025910	AT1G76540.1	12857813
AT4G34160.1	PGSC0003DMT400001218	AT2G27970.1	17426018
AT4G34160.1	PGSC0003DMT400048460	AT2G27970.1	17426018
AT4G34160.1	PGSC0003DMT400001218	AT2G27970.1	20706207
AT4G34160.1	PGSC0003DMT400048460	AT2G27970.1	20706207
AT4G34160.1	PGSC0003DMT400040785	AT3G19150.1	17426018
AT4G34160.1	PGSC0003DMT400066394	AT3G19150.1	17426018
AT4G34160.1	PGSC0003DMT400040785	AT3G19150.1	20706207
AT4G34160.1	PGSC0003DMT400066394	AT3G19150.1	20706207
AT4G34160.1	PGSC0003DMT400077428	AT3G48750.1	11096103
AT4G34160.1	PGSC0003DMT400077428	AT3G48750.1	16517759
AT4G34160.1	PGSC0003DMT400077428	AT3G48750.1	16766674
AT4G34160.1	PGSC0003DMT400077428	AT3G48750.1	17426018
AT4G34160.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT4G34160.1	PGSC0003DMT400057203	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107730.2.1	Tomato	nucleus	95.81	94.23
VIT_07s0129g01100.t01	Wine grape	nucleus	53.63	62.14
VIT_03s0180g00040.t01	Wine grape	nucleus	65.36	60.62
KRG90996	Soybean	nucleus	61.17	55.73
KRH35760	Soybean	nucleus	60.06	53.48
PGSC0003DMT400039904	Potato	nucleus	48.04	53.42
CDX76265	Canola	nucleus	53.07	52.05
CDX72453	Canola	nucleus	52.23	51.94
CDY57741	Canola	nucleus	52.79	51.78
Bra011501.1-P	Field mustard	nucleus	53.91	51.74
PGSC0003DMT400020648	Potato	nucleus	47.77	51.51
CDX75405	Canola	nucleus	53.63	51.47
Bra017629.1-P	Field mustard	nucleus	52.51	51.09
CDY69708	Canola	nucleus	53.35	51.07
CDY49278	Canola	nucleus	52.51	50.95
Bra034612.1-P	Field mustard	nucleus	52.23	50.82
AT4G34160.1	Thale cress	nucleus	53.07	50.53
PGSC0003DMT400031329	Potato	nucleus	44.97	50.0
PGSC0003DMT400064307	Potato	nucleus	50.56	49.86
PGSC0003DMT400068629	Potato	cytosol	32.4	48.33
PGSC0003DMT400011487	Potato	nucleus	22.07	42.93
PGSC0003DMT400068627	Potato	nucleus	35.47	41.23
GSMUA_Achr2P05260_001	Banana	nucleus	32.68	33.91
GSMUA_Achr1P09780_001	Banana	cytosol	36.59	33.76
GSMUA_AchrUn_...	Banana	cytosol	29.33	33.12
GSMUA_Achr4P20220_001	Banana	nucleus	33.24	32.87
GSMUA_Achr3P13140_001	Banana	nucleus	36.87	32.43
HORVU5Hr1G050270.8	Barley	cytosol	31.01	31.62
TraesCS5D01G165900.1	Wheat	cytosol	30.73	31.07
TraesCS5B01G158400.1	Wheat	cytosol	30.73	31.07
TraesCS5A01G161000.1	Wheat	cytosol	30.73	31.07
Os09t0111100-01	Rice	cytosol	31.56	31.04
PGSC0003DMT400033588	Potato	nucleus	30.45	30.62
GSMUA_Achr3P01010_001	Banana	nucleus	34.64	30.47
PGSC0003DMT400040287	Potato	nucleus	27.37	29.17
PGSC0003DMT400037827	Potato	nucleus	27.65	28.78
PGSC0003DMT400088718	Potato	nucleus	24.02	27.74
Zm00001d019696_P001	Maize	cytosol	29.61	27.39
Zm00001d005293_P001	Maize	cytosol	29.61	27.11
EER96424	Sorghum	cytosol	28.77	26.96
PGSC0003DMT400041637	Potato	nucleus	27.93	25.38
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	21.23	25.33
PGSC0003DMT400039033	Potato	nucleus	21.79	25.08
PGSC0003DMT400012934	Potato	nucleus	20.67	24.42

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	ProteinID:ABY25839	ProteinID:ABY25839.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EMBL:EU325651	GO:GO:0000003	GO:GO:0000082	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150
GO:GO:0009719	GO:GO:0009735	GO:GO:0009744	GO:GO:0009791	GO:GO:0009987	GO:GO:0010444
GO:GO:0030154	GO:GO:0048316	UniProt:M1CFR4	PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400025868
PGSC:PGSC0003DMG400025868	EnsemblPlants:PGSC0003DMT400066557	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF242	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000294EBA0	SEG:seg	:	:

Description

D-type cyclin family 3 subgroup 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025868]

Coordinates

chr1:-:84127314..84129231

Molecular Weight (calculated)

41178.6 Da

IEP (calculated)

4.482

GRAVY (calculated)

-0.024

Length

358 amino acids

Sequence
(BLAST)

001: MAIANNDQSF LLDVLYCEEE EEKWGDLLED EEGVIINPLL LSSEGTTKTN SLLLLPLLLL EQDLFWEDEE LLSLFIKEKE THCCFDSFGS DPFLCSARVD
101: VVEWILKVNA HYDFSALTAI LAINYLDRFL SSLQFQKDKP WMTQLAAVTC LSLAAKVEET QVPLLLDFQV EDAKYVFEAK TIQRMELLVL SSLKWRMNPV
201: TPLSFLDHII RRLGLKNNAH WEFLRRCESL LLFVMTDCRF VRYMPSVLAT AIMLHVIHQV EPCNAVDYQN QLLGVLKISK ENVNNCYELI SEVPIISHKR
301: KYDENPSSPS DVIDPIYTSE SSNDSWELDL PLFKKSKVQE QQMKMASRVF VEAVGSPH

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.